Factsheet for TraesCS5D01G145900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G058920.3	Barley	cytosol	40.41	92.86
HORVU3Hr1G057870.3	Barley	cytosol	38.86	92.59
TraesCS5A01G146400.1	Wheat	mitochondrion, plasma membrane, plastid, vacuole	98.45	90.48
TraesCS5B01G145200.1	Wheat	mitochondrion, plasma membrane, vacuole	98.45	90.48
HORVU5Hr1G046370.1	Barley	mitochondrion	98.19	90.24
HORVU5Hr1G083060.1	Barley	cytosol, plastid, vacuole	32.9	82.47
HORVU3Hr1G003960.2	Barley	cytosol	24.35	81.74
Os12t0117300-00	Rice	cytosol	80.83	81.68
Os11t0118200-01	Rice	cytosol	42.23	80.69
HORVU5Hr1G083020.2	Barley	extracellular, mitochondrion, plastid, vacuole	26.94	80.62
HORVU6Hr1G036770.2	Barley	cytosol	23.32	72.0
EES09143	Sorghum	cytosol, plasma membrane, plastid, vacuole	76.94	69.56
Zm00001d005052_P002	Maize	plasma membrane	76.94	68.59
GSMUA_Achr7P22010_001	Banana	cytosol	68.91	64.25
VIT_08s0058g01460.t01	Wine grape	cytosol, nucleus, plastid, vacuole	57.51	54.41
HORVU6Hr1G009620.1	Barley	cytosol	21.5	52.87
VIT_08s0058g01480.t01	Wine grape	cytosol, mitochondrion, vacuole	59.07	50.89
Solyc10g074920.1.1	Tomato	extracellular	58.55	50.33
PGSC0003DMT400080203	Potato	endoplasmic reticulum	58.03	49.89
KRH64877	Soybean	endoplasmic reticulum	56.99	47.52
KRH00473	Soybean	nucleus	56.22	46.97
CDY11173	Canola	endoplasmic reticulum, vacuole	53.11	46.38
AT5G01930.1	Thale cress	endoplasmic reticulum	52.33	45.09
KRH40712	Soybean	nucleus	55.7	43.97
KRH09553	Soybean	endoplasmic reticulum, plastid, vacuole	55.96	43.55
TraesCS3D01G273400.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	48.96	42.47
TraesCS3D01G241300.1	Wheat	extracellular	46.37	42.12
TraesCS6D01G312500.1	Wheat	golgi, vacuole	44.3	40.71
TraesCS6D01G312600.1	Wheat	vacuole	42.49	39.71
TraesCS6D01G311900.1	Wheat	vacuole	43.26	39.2
TraesCS7D01G225500.1	Wheat	vacuole	41.19	37.06
TraesCS5D01G504800.1	Wheat	vacuole	41.19	33.47
Bra005662.1-P	Field mustard	nucleus	53.11	32.33
CDY61603	Canola	nucleus	44.04	24.11

Protein Annotations

EnsemblPlants:TraesCS5D01G145900.1	EnsemblPlantsGene:TraesCS5D01G145900	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009791	GO:GO:0009845
GO:GO:0016787	InterPro:Glyco_hydro_5	InterPro:Glyco_hydro_5_CS	InterPro:Glycoside_hydrolase_SF	PANTHER:PTHR31451	PANTHER:PTHR31451:SF9
PFAM:PF00150	ScanProsite:PS00659	SEG:seg	SUPFAM:SSF51445	MapMan:21.2.3.2.2	:

Description

No Description!

Coordinates

chr5D:-:232597768..232599657

Molecular Weight (calculated)

43209.5 Da

IEP (calculated)

4.210

GRAVY (calculated)

-0.226

Length

386 amino acids

Sequence
(BLAST)

001: MSQEPDAEEE WAAVEGRGAH LVTGAAERPF IIHGFNTYWL MSFAADEATR PRVTAAIAEA AGAGLNVCRT WAFADGGYHA LQTAPFCYDE EVFQALDFVV
101: SEARRYKMRL ILSLCNNWED YGGKAQYVRW GKEAGVDLTS DDDFFSDPTL KGYYKAFVEA VLSRINTITN EAYKDDPTIL AWELINEPRC PSDPSGDTLQ
201: AWIEEMASYV KSIDTMHLVE IGIEGYYGPS TPELLLVNPD DYSGHVGTDF IRNHQAMGID LASVHIYSDT WLPDSTEESH VQFVNTWMQQ HIDDAANLLA
301: MPIVIGEFGL SLKDGKFENE FRETFMQTVY NNFLGSWESG MIGGGCLLWQ LFPEGAEHMD DGYAVIFAKS PSTFNLLANH SRKLEC

Best Arabidopsis Sequence Match ( AT5G01930.1 )
(BLAST)

001: MKDQLGFRIV LCSAVFIILT QNRALADLDS ESHEVNSESV GEEQWEMVQR KGMQFTLNGQ PFYVNGFNTY WMMTLAADNS TRGKVTEVFQ QASAVGMTVG
101: RTWAFNDGQW RALQKSPSVY DEEVFKALDF VLSEARKYKI RLILSLVNNW DAYGGKAQYV KWGNASGLNL TSDDDFFTNP TLRNFYQSHV RTVLNRVNTF
201: TNITYKNDPT IFAWELMNEP RCPSDPSGDK LQSWIQEMAV FVKSLDAKHL VEIGLEGFYG PSAPARTRFN PNPYAAQVGT DFIRNNQVLG IDFASVHVYP
301: DSWISPAVSN SFLEFTSSWM QAHVEDAEMY LGMPVLFTEF GVSAHDPGFN TSFRDMMLNT VYKMTLNSTR KGGAGAGSLV WQVFPQGAEF MDDGYAVYLT
401: RAHTASKIIS LQSKRLAIFN SLCSWRCRWG CKKKNQTALD ALLSHDEL

Arabidopsis Description

MAN6Mannan endo-1,4-beta-mannosidase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZV3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.