CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00473	Soybean	nucleus	91.82	97.19
VIT_08s0058g01460.t01	Wine grape	cytosol, nucleus, plastid, vacuole	68.3	81.86
KRH64877	Soybean	endoplasmic reticulum	75.66	79.91
VIT_08s0058g01480.t01	Wine grape	cytosol, mitochondrion, vacuole	68.71	75.0
Solyc10g074920.1.1	Tomato	extracellular	66.46	72.38
KRH09553	Soybean	endoplasmic reticulum, plastid, vacuole	73.42	72.38
PGSC0003DMT400080203	Potato	endoplasmic reticulum	65.85	71.71
CDY11173	Canola	endoplasmic reticulum, vacuole	60.12	66.52
AT5G01930.1	Thale cress	endoplasmic reticulum	60.53	66.07
HORVU4Hr1G058920.3	Barley	cytosol	22.49	65.48
HORVU3Hr1G057870.3	Barley	cytosol	21.47	64.81
Os11t0118200-01	Rice	cytosol	25.36	61.39
HORVU3Hr1G003960.2	Barley	cytosol	14.31	60.87
GSMUA_Achr3P09750_001	Banana	endoplasmic reticulum	56.65	59.7
HORVU5Hr1G083020.2	Barley	extracellular, mitochondrion, plastid, vacuole	15.75	59.69
HORVU5Hr1G083060.1	Barley	cytosol, plastid, vacuole	18.61	59.09
GSMUA_Achr7P22010_001	Banana	cytosol	49.08	57.97
Os12t0117300-00	Rice	cytosol	44.17	56.54
HORVU6Hr1G036770.2	Barley	cytosol	14.31	56.0
TraesCS5D01G145900.1	Wheat	cytosol	43.97	55.7
HORVU5Hr1G046370.1	Barley	mitochondrion	44.58	51.9
TraesCS5B01G145200.1	Wheat	mitochondrion, plasma membrane, vacuole	44.38	51.67
TraesCS5A01G146400.1	Wheat	mitochondrion, plasma membrane, plastid, vacuole	44.17	51.43
EES09143	Sorghum	cytosol, plasma membrane, plastid, vacuole	44.38	50.82
Zm00001d005052_P002	Maize	plasma membrane	44.58	50.35
KRH23949	Soybean	vacuole	40.49	48.65
KRH39855	Soybean	vacuole	40.29	48.4
KRG96633	Soybean	nucleus	39.88	47.56
Bra005662.1-P	Field mustard	nucleus	61.55	47.48
KRH68364	Soybean	vacuole	39.47	47.07
KRH28716	Soybean	vacuole	40.7	46.82
KRG96685	Soybean	golgi, vacuole	39.47	46.06
KRH61141	Soybean	cytosol, nucleus, vacuole	37.83	45.68
KRH51830	Soybean	endoplasmic reticulum, vacuole	38.45	44.76
KRH22381	Soybean	vacuole	39.06	44.63
KRH68408	Soybean	vacuole	37.83	44.58
KRH26952	Soybean	extracellular, plasma membrane, vacuole	38.45	43.93
KRH25580	Soybean	mitochondrion	38.45	43.12
KRH55954	Soybean	mitochondrion, vacuole	38.04	42.66
KRH76746	Soybean	plasma membrane	40.49	42.13
KRH05852	Soybean	extracellular, golgi, vacuole	37.01	41.9
KRH15168	Soybean	extracellular, golgi, vacuole	36.4	41.49
KRH33420	Soybean	extracellular, golgi	28.83	41.47
HORVU6Hr1G009620.1	Barley	cytosol	13.29	41.4
CDY61603	Canola	nucleus	53.17	36.88

Protein Annotations

EntrezGene:100805357	MapMan:21.2.3.2.2	Gene3D:3.20.20.80	EMBL:ACUP02006047	EnsemblPlantsGene:GLYMA_09G273500	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0016798	GO:GO:0016985	GO:GO:0046355	InterPro:Glyco_hydro_5
InterPro:Glycoside_hydrolase_SF	UniProt:I1L6Z0	EnsemblPlants:KRH40712	ProteinID:KRH40712	ProteinID:KRH40712.1	PFAM:PF00150
PANTHER:PTHR31451	PANTHER:PTHR31451:SF17	SUPFAM:SSF51445	UniParc:UPI0002963368	:	:

Description

hypothetical protein

Coordinates

chr9:+:48970606..48973503

Molecular Weight (calculated)

55551.6 Da

IEP (calculated)

5.345

GRAVY (calculated)

-0.429

Length

489 amino acids

Sequence
(BLAST)

001: MEENLRCSHI YYGPKEHIDT MTRQPSSMES FGVCIISLIL LLMLTKNLSS NALGDSIKDE EGLKEDQNEM ENSLSNNDEM RGMKDDDWQM VQKKGNQFVV
101: NDKPFYVNGF NTYWLMVFAA DESTRGKVTE VFKQASSVGM TVCRTWAFND GQWRALQKSP SVYDEEVFKA LDFVVSEAKK YKIRLILSLA NNWEAYGGKA
201: QYVKWGNAAG LNLTSDDDFY SHPTLRSYYK AHVKTVLNRV NTFTNITYKE DPTIFAWELM NEPRCTSDPT GDKLQDWIQE MAFHVKKIDP KHLVEVGVEG
301: FYGPSTPQRT QLNPNTYATQ VGTDFIRNHL VLGVDFASVH MYPDSWISQQ IADTHIPFVK SWMEAHIEDA ERYLGMPVVF AEFGVSSKDP GYNSSYRDTV
401: ISTVYSTILN STKKGGSGAG SLLWQFFPDG TDNMDDGYAI VLSKSPSTSS IIQLQSTRLA LFNSLCNTKC NWGCKKKKLL EEILYHDEL

Best Arabidopsis Sequence Match ( AT3G10890.1 )
(BLAST)

001: MKCLCFVVLL AILIAQNSSD LGVKSASSDG FVSRKGVQFI LNGKPFYANG FNAYWLAYEA TDSTTRFKIT YVFQNATIHD LTIVRTWGFR DGGYRALQIA
101: PGVYDEKTFQ GLDFAIAEAK RLGIKMIITF VNNYSDFGGR KQYVDWAKNT GQNVSSDDDF YTNPLVKQYY KNHVKTMVNR VNTFTKVEYK DEPTIMGWEL
201: MNEPQCRADP SGKTLTAWMN EMALYVKSVD SKHLLSTGLE GFYGDSSPQR KTSLNPVAAN VLGTDFIANH KLDAIDFASI HSYPDLWFPN LDEKSRLNLL
301: RKWLECHLED AQNILKKPLI LGEFGKPTNT PGYTQAQRDA VFNATFDTIY ESAEKGGPAA GALFWHVISD GMNNFKDPLS IVLSENSTTV NIITEESRKL
401: GLIRGKGKLS KTKI

Arabidopsis Description

MAN3Mannan endo-1,4-beta-mannosidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SG94]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.