Factsheet for TraesCS6D01G110500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G201500.1
TraesCS5B01G200200.1
TraesCS5D01G207800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61290.1	TraesCS5A01G201500.1	AT2G19560.1	19843313
AT5G61290.1	TraesCS5B01G200200.1	AT2G19560.1	19843313
AT5G61290.1	TraesCS5D01G207800.1	AT2G19560.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G120500.2	Wheat	cytosol	90.36	89.42
TraesCS6D01G110300.1	Wheat	cytosol	87.84	83.3
TraesCS6B01G148900.1	Wheat	cytosol	88.89	82.81
TraesCS4D01G269000.1	Wheat	cytosol	71.7	68.81
TraesCS3D01G000800.1	Wheat	cytosol	70.02	64.73
TraesCS7D01G425900.1	Wheat	cytosol	61.43	60.16
PGSC0003DMT400063125	Potato	cytosol, peroxisome, plastid	54.72	57.36
Solyc03g115560.2.1	Tomato	cytosol, peroxisome, plastid	54.3	56.92
VIT_17s0000g06790.t01	Wine grape	cytosol, peroxisome, plastid	53.46	56.17
CDY14028	Canola	cytosol, mitochondrion, peroxisome, plastid	53.04	55.12
CDY40773	Canola	mitochondrion	52.62	54.68
Bra012970.1-P	Field mustard	cytosol	51.15	54.59
Bra012971.1-P	Field mustard	cytosol	52.62	54.57
CDX99030	Canola	cytosol, mitochondrion, peroxisome, plastid	51.78	54.53
Bra028683.1-P	Field mustard	mitochondrion	52.2	54.25
CDY02158	Canola	cytosol	45.49	54.11
CDY23072	Canola	cytosol	45.49	54.11
CDX69991	Canola	cytosol, mitochondrion, peroxisome, plastid	51.36	54.08
AT5G07800.1	Thale cress	cytosol	51.78	53.7
Bra009308.1-P	Field mustard	cytosol, mitochondrion, peroxisome	51.78	53.58
CDY02157	Canola	cytosol	51.78	53.46
CDY23071	Canola	cytosol	51.57	53.25
AT5G61290.1	Thale cress	cytosol	50.73	52.49
KRH55196	Soybean	cytosol, mitochondrion, peroxisome	11.95	50.0
TraesCS4D01G360800.1	Wheat	cytosol	31.03	46.54
TraesCS6D01G139800.1	Wheat	mitochondrion	41.72	44.22
TraesCS4D01G361000.1	Wheat	cytosol	41.72	43.17
TraesCS4D01G360900.1	Wheat	cytosol	41.09	40.58
TraesCS1D01G213900.2	Wheat	peroxisome	42.14	40.52
TraesCS1D01G214400.1	Wheat	peroxisome	34.17	32.02
VIT_17s0000g06780.t01	Wine grape	cytosol, peroxisome, plastid	52.62	23.55

Protein Annotations

Gene3D:3.50.50.60	MapMan:35.1	InterPro:FAD/NAD-bd_sf	InterPro:Flavin_mOase	InterPro:Flavin_mOase-like	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004499	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0050660	GO:GO:0050661	GO:GO:0055114	InterPro:IPR036188	PFAM:PF00743	PIRSF:PIRSF000332
PRINTS:PR00370	PANTHER:PTHR23023	PANTHER:PTHR23023:SF86	SUPFAM:SSF51905	EnsemblPlantsGene:TraesCS6D01G110500	EnsemblPlants:TraesCS6D01G110500.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:76050479..76052299

Molecular Weight (calculated)

53237.0 Da

IEP (calculated)

5.936

GRAVY (calculated)

-0.313

Length

477 amino acids

Sequence
(BLAST)

001: MVSDDIKIKP LQRQKVCVIG AGMAGLASAR ELRREGHDVT VLEQSGDVGG QWRYDPRTDG DDPLGGAAAP VKVHSSMYAS LRLISARENM GFTDFQFAPK
101: DGRDGRRFPG HREVYLYLKD FCAAFGLMAS VRLNTSVVRV ALAPGPTRRW TVRSVDLGKC HGADEEEEEV FDAVVVANGH YSQPRLPSIE GMEAWRGRQV
201: RSHSYRVAEP FRGEVVVVVG CGESGKDIAM EVRRVAKEVH LVAKSMEEVT QGLAKVLSKY SASVHLQLHV ERLCEDGRVV FGDGSSVFAD TIIYCTGYNY
301: TFPFLDTEGA VTVDDNRVGP LFEHVFPPSL APSLSFIGIP IKVFAPWFFE AQAKWVAQVL SGKRTLPSEE EMMRSVEEYY HAREMAGAPK KYTHDVSLFD
401: TTYIDEFGSK YCDFPGVEKW RYELLLSSFV NMLDNLETFR DEYKDSDSIR NSVEEWHLSA QQAQATAAPA ATKKQSQ

Best Arabidopsis Sequence Match ( AT5G07800.1 )
(BLAST)

001: MVTFTSEASR SRSKKVCVIG AGPAGLVSAR ELRKEGHKVV VLEQNEDVGG QWFYQPNVEE EDPLGRSSGS INGELKVHSS IYSSLRLTSP REIMGYSDFP
101: FLAKKGRDMR RFPGHKELWL YLKDFSEAFG LREMIRFNVR VEFVGEKEEE DDVKKWIVRS REKFSGKVME EIFDAVVVAT GHYSHPRLPS IKGMDSWKRK
201: QIHSHVYRVP DPFRNEVVVV VGNSMSGQDI SMELVEVAKE VHLSAKTLDI SSGLSKVISK HPNLLIHPQI ESLEDDGKVI FVDGSWVVAD TILYCTGYSY
301: KFPFLESKGR IEVDDDRVGP LFEHTFPPCL SPSLSFVGIP RKLIGFPFFE AQAKWIAQVL SGKSSLPSPD QMLQSVDEFY RSRDLAGVPK HNTHDIADFT
401: YCDKYADYVG FPHLEDWRKL LCLSALNNSQ ENLETYRDSW DDHELLQEAL QSSHFTNFNS

Arabidopsis Description

Flavin-containing monooxygenase [Source:UniProtKB/TrEMBL;Acc:A0A178UJX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.