Factsheet for TraesCS6D01G110300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G201500.1
TraesCS5B01G200200.1
TraesCS5D01G207800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61290.1	TraesCS5A01G201500.1	AT2G19560.1	19843313
AT5G61290.1	TraesCS5B01G200200.1	AT2G19560.1	19843313
AT5G61290.1	TraesCS5D01G207800.1	AT2G19560.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G087500.1	Wheat	cytosol	94.04	88.74
TraesCS6D01G110500.1	Wheat	cytosol	83.3	87.84
TraesCS6A01G120500.2	Wheat	cytosol	83.7	87.34
TraesCS1B01G006000.1	Wheat	mitochondrion	66.6	82.92
TraesCS1B01G006200.1	Wheat	cytosol	71.97	81.17
TraesCS4D01G269000.1	Wheat	cytosol	67.99	68.81
TraesCS3D01G000800.1	Wheat	cytosol	66.8	65.12
TraesCS7D01G425900.1	Wheat	cytosol	57.65	59.55
PGSC0003DMT400063125	Potato	cytosol, peroxisome, plastid	51.29	56.7
Solyc03g115560.2.1	Tomato	cytosol, peroxisome, plastid	50.89	56.26
VIT_17s0000g06790.t01	Wine grape	cytosol, peroxisome, plastid	49.5	54.85
Bra012970.1-P	Field mustard	cytosol	48.51	54.59
Bra012971.1-P	Field mustard	cytosol	49.9	54.57
CDY14028	Canola	cytosol, mitochondrion, peroxisome, plastid	49.7	54.47
CDY23072	Canola	cytosol	43.34	54.36
CDY02158	Canola	cytosol	43.34	54.36
CDY40773	Canola	mitochondrion	49.3	54.03
CDY23071	Canola	cytosol	49.5	53.9
CDX99030	Canola	cytosol, mitochondrion, peroxisome, plastid	48.51	53.86
Bra028683.1-P	Field mustard	mitochondrion	49.11	53.81
CDY02157	Canola	cytosol	49.3	53.68
CDX69991	Canola	cytosol, mitochondrion, peroxisome, plastid	48.11	53.42
AT5G07800.1	Thale cress	cytosol	48.71	53.26
Bra009308.1-P	Field mustard	cytosol, mitochondrion, peroxisome	48.51	52.93
AT5G61290.1	Thale cress	cytosol	48.11	52.49
KRH55196	Soybean	cytosol, mitochondrion, peroxisome	10.93	48.25
TraesCS4D01G360800.1	Wheat	cytosol	28.83	45.6
TraesCS6D01G139800.1	Wheat	mitochondrion	39.36	44.0
TraesCS4D01G361000.1	Wheat	cytosol	39.36	42.95
TraesCS4D01G360900.1	Wheat	cytosol	38.97	40.58
TraesCS1D01G213900.2	Wheat	peroxisome	39.76	40.32
TraesCS1D01G214400.1	Wheat	peroxisome	32.8	32.42
VIT_17s0000g06780.t01	Wine grape	cytosol, peroxisome, plastid	49.3	23.26

Protein Annotations

Gene3D:3.50.50.60	MapMan:35.1	InterPro:FAD/NAD-bd_sf	InterPro:Flavin_mOase	InterPro:Flavin_mOase-like	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004499	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0050660	GO:GO:0050661	GO:GO:0055114	InterPro:IPR036188	PFAM:PF00743	PRINTS:PR00370
PANTHER:PTHR23023	PANTHER:PTHR23023:SF86	SUPFAM:SSF51905	EnsemblPlantsGene:TraesCS6D01G110300	EnsemblPlants:TraesCS6D01G110300.1	SEG:seg

Description

No Description!

Coordinates

chr6D:+:76010899..76020127

Molecular Weight (calculated)

56130.7 Da

IEP (calculated)

5.039

GRAVY (calculated)

-0.217

Length

503 amino acids

Sequence
(BLAST)

001: MKIDMVCDDD IKPLQRQKVC VIGAGMAGLA SARELRREGH DVTVLEQSGD VGGQWRYDPM TDGADPLGAA AAPVKVHGSM YASLRLISAR ETMGFTDFQF
101: APKDGRDVRR FPGHREVYLY LKDFCDAFGL MELVRLNTGV VRVALAPGPI PTRQWMVRSV DLGKSDGAEE VEEEFDAVVV ANGHYSQPRL PSIVGMEVWR
201: GRQVHSHSYR VPEPFRDEVV VVVGCGASGK DIAMEVRRVA KEVHLVAKSM EEVTQELAKV LSKYSASLHL QLHVERLCED GRVVFGDGSS ILADTIIYCT
301: GFNYSFPFLD TEGAVTVDDN CVGPLFEHVF PPSLAPSLSF VGIPVKVFAP WFFEAQAKWV AQVLSGKRTL PPEEEMVRSV EEYYRAREAA GAPKNYTHDV
401: SLFDTTALTT THNLHDNRTI FMDEFVSKYC DFRSVEKWRY ELLVSSLVNM FDNLETFRDE YQDSDSIRKG VEEWHLSAQR AQAAAAGPAT TKEQSLGLLE
501: QVE

Best Arabidopsis Sequence Match ( AT5G07800.1 )
(BLAST)

001: MVTFTSEASR SRSKKVCVIG AGPAGLVSAR ELRKEGHKVV VLEQNEDVGG QWFYQPNVEE EDPLGRSSGS INGELKVHSS IYSSLRLTSP REIMGYSDFP
101: FLAKKGRDMR RFPGHKELWL YLKDFSEAFG LREMIRFNVR VEFVGEKEEE DDVKKWIVRS REKFSGKVME EIFDAVVVAT GHYSHPRLPS IKGMDSWKRK
201: QIHSHVYRVP DPFRNEVVVV VGNSMSGQDI SMELVEVAKE VHLSAKTLDI SSGLSKVISK HPNLLIHPQI ESLEDDGKVI FVDGSWVVAD TILYCTGYSY
301: KFPFLESKGR IEVDDDRVGP LFEHTFPPCL SPSLSFVGIP RKLIGFPFFE AQAKWIAQVL SGKSSLPSPD QMLQSVDEFY RSRDLAGVPK HNTHDIADFT
401: YCDKYADYVG FPHLEDWRKL LCLSALNNSQ ENLETYRDSW DDHELLQEAL QSSHFTNFNS

Arabidopsis Description

Flavin-containing monooxygenase [Source:UniProtKB/TrEMBL;Acc:A0A178UJX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.