Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G464900.1 | Wheat | nucleus | 94.83 | 94.83 |
| TraesCS7D01G020700.1 | Wheat | nucleus | 71.41 | 74.29 |
| HORVU5Hr1G122180.1 | Barley | cytosol | 66.46 | 68.39 |
| TraesCS7D01G027700.2 | Wheat | cytosol | 42.74 | 55.42 |
| TraesCS3D01G491500.2 | Wheat | cytosol | 42.74 | 55.42 |
| TraesCS2D01G511600.2 | Wheat | nucleus | 59.54 | 55.06 |
| TraesCS7D01G005300.1 | Wheat | cytosol | 12.4 | 47.8 |
| TraesCS7D01G005400.1 | Wheat | cytosol, nucleus, peroxisome | 44.87 | 43.1 |
| TraesCS2D01G024500.2 | Wheat | cytosol | 23.95 | 41.07 |
| Os10t0370100-01 | Rice | cytosol, plasma membrane, plastid | 39.32 | 39.86 |
| TraesCS7D01G007900.1 | Wheat | cytosol | 45.55 | 39.1 |
| TraesCS5D01G332000.1 | Wheat | cytosol | 43.12 | 38.78 |
| TraesCS7D01G004600.1 | Wheat | cytosol | 44.94 | 38.73 |
| TraesCS7D01G007300.2 | Wheat | cytosol, plastid | 44.94 | 38.38 |
| TraesCS7D01G452200.1 | Wheat | cytosol | 27.83 | 37.85 |
| TraesCS1D01G028900.1 | Wheat | cytosol | 23.95 | 37.82 |
| TraesCS5D01G494600.1 | Wheat | cytosol | 21.22 | 37.75 |
| TraesCS1D01G381400.1 | Wheat | cytosol, nucleus, plastid | 44.56 | 37.32 |
| TraesCS5D01G522000.1 | Wheat | cytosol, plastid | 8.59 | 35.2 |
| TraesCS4D01G002300.1 | Wheat | cytosol | 8.14 | 33.54 |
| TraesCS7D01G513100.2 | Wheat | cytosol | 24.71 | 32.5 |
| Os11t0462900-00 | Rice | plasma membrane | 39.01 | 32.35 |
| TraesCS4D01G089900.1 | Wheat | plastid | 29.73 | 29.51 |
| TraesCS5D01G349800.2 | Wheat | nucleus | 29.73 | 29.01 |
| TraesCS4D01G002400.1 | Wheat | endoplasmic reticulum, golgi | 11.86 | 27.18 |
| TraesCS2D01G574800.1 | Wheat | cytosol | 5.32 | 26.32 |
| TraesCS2D01G004500.1 | Wheat | cytosol | 21.98 | 23.59 |
| TraesCS1D01G040300.1 | Wheat | cytosol | 27.98 | 22.14 |
| TraesCS5D01G492000.1 | Wheat | cytosol | 4.94 | 21.89 |
| TraesCS2D01G574600.1 | Wheat | cytosol | 27.76 | 18.57 |
| TraesCS7D01G024900.1 | Wheat | golgi | 28.97 | 18.12 |
Protein Annotations
| MapMan:15.5.5.3 | Gene3D:2.40.330.10 | Gene3D:3.40.50.300 | Gene3D:3.80.10.10 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0043531 |
| InterPro:IPR003340 | InterPro:IPR015300 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:NB-ARC | InterPro:P-loop_NTPase |
| PFAM:PF00931 | PFAM:PF02362 | PRINTS:PR00364 | PFscan:PS50863 | PANTHER:PTHR43889 | PANTHER:PTHR43889:SF7 |
| SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF52058 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS7D01G022400 | EnsemblPlants:TraesCS7D01G022400.1 |
| TIGR:cd10017 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7D:+:10503784..10508254
Molecular Weight (calculated)
148711.0 Da
IEP (calculated)
7.734
GRAVY (calculated)
-0.212
Length
1315 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRIGIDLTDE DEDEELDLSK QKSLMHSAFI YDPTTATFSD PVARQRVGNS TVLEESCLLT SSDISMLSDG SVSASLGTMR PLVEKLDMLL ASAQEYSSLP
0101: KRIKDGMQLL KHDVEVLSFY LDELAEVEDP PPMAKCWMNE AHGLSYDMED YIDSLLFVPP DHFIKKKKKG RRKKKIMIKK RLKWYKQIVC RAQVSEYGIK
0201: TSKINHVNVS RLPSKPKIAK TISEFRSYVQ EAIERYDRYS LQCCSTLRRR FLSTSIMLPM PYEEAAHIVI DGRMNEFINS LAANDAADQQ QLKVVSVLGS
0301: GCLGKTTLAN VLYDRIRMQF ECRAFIQVSK NPDMKRLFRN LFLQLHKKKQ PRPANCNDLD ISDINISKHL QDKRYLIVID DLWDASVWDI IKYAFPKGNC
0401: GSRIIITTQI DDVALTCCCD HSEHVFEMKP LDGDHSRKLF FDKLFGSESD CPEEFKQVSK EIVDICGGLP LATINIASHL ANQDTEVSMD FLAYTRDTLR
0501: SYLWSNSTSE ITKQVLNLSY NSLPHYLKTC LLYLHIYPEV SIIWKDDLVK QWVAEGFIAT RKGKEQDQEM IEKAAGLYFD ALIERRFIQP SCINYNNKVL
0601: SCTVHEVVRD LIAHKSAEEN FVVVVDCNRK NIALSHKVRR LSLVFGDAKY AKIPANITKS QVRSLRFFGL FECMPCIREF KVLRLLDLQL FGCCGDPDPI
0701: DLTGISELFQ LRYLKIASDV CIRLPNRMRG LKCLETLDIL NATRVTAIPW DIIHLPHLLH LILPVDTDLL DWIGSMSDSV IREWSLGKLK YLQDLHLTYF
0801: STLPSYNHLE TSMEVLGSLI GGHGNLKTIV VAHGSSVKNI VDLSIGYGAS KAITPLFRMA PPPLLQRFEF SLHNCCIFSQ IPLWVEKHGN LCILKIPVME
0901: MKMVCVDILG GLHALTTLSL YVETAPIHKI IFNKAAGFSV LKYFKLRCTT GIPWLKFEAD AMPNLLKLKL VFNAIPPMDQ PLFFTSGQRR HKVRHEHGTA
1001: VISIEHMPGL KEISAQLEGA VSDLEHASRT FISNHPSNPT INMQLVGCSS NVDGSRKRKQ QPDDTLKDEY AKRLEMTADK RIATSLESSS SLDDLRMPVS
1101: QFFDSPAFSI CQPVESSSRL DDAEITPSGS DEGRQHMFDK VVTPSDVGKL NRLVVPKHFS EKYFPLDAAA NDKGMLLSFE DRGGKLWQFR YSYWNSSQSY
1201: VMTKGWSRFV KEKRLNAGDT VSFCRGATEA TRDRLFIDWK CRAVVHDSLP KLDRPSRAIQ KRVRLFGVNL DTQQPQGGEL THDANAGAAG VESSAAASSP
1301: SSSPTEAHSS LDLGM
0101: KRIKDGMQLL KHDVEVLSFY LDELAEVEDP PPMAKCWMNE AHGLSYDMED YIDSLLFVPP DHFIKKKKKG RRKKKIMIKK RLKWYKQIVC RAQVSEYGIK
0201: TSKINHVNVS RLPSKPKIAK TISEFRSYVQ EAIERYDRYS LQCCSTLRRR FLSTSIMLPM PYEEAAHIVI DGRMNEFINS LAANDAADQQ QLKVVSVLGS
0301: GCLGKTTLAN VLYDRIRMQF ECRAFIQVSK NPDMKRLFRN LFLQLHKKKQ PRPANCNDLD ISDINISKHL QDKRYLIVID DLWDASVWDI IKYAFPKGNC
0401: GSRIIITTQI DDVALTCCCD HSEHVFEMKP LDGDHSRKLF FDKLFGSESD CPEEFKQVSK EIVDICGGLP LATINIASHL ANQDTEVSMD FLAYTRDTLR
0501: SYLWSNSTSE ITKQVLNLSY NSLPHYLKTC LLYLHIYPEV SIIWKDDLVK QWVAEGFIAT RKGKEQDQEM IEKAAGLYFD ALIERRFIQP SCINYNNKVL
0601: SCTVHEVVRD LIAHKSAEEN FVVVVDCNRK NIALSHKVRR LSLVFGDAKY AKIPANITKS QVRSLRFFGL FECMPCIREF KVLRLLDLQL FGCCGDPDPI
0701: DLTGISELFQ LRYLKIASDV CIRLPNRMRG LKCLETLDIL NATRVTAIPW DIIHLPHLLH LILPVDTDLL DWIGSMSDSV IREWSLGKLK YLQDLHLTYF
0801: STLPSYNHLE TSMEVLGSLI GGHGNLKTIV VAHGSSVKNI VDLSIGYGAS KAITPLFRMA PPPLLQRFEF SLHNCCIFSQ IPLWVEKHGN LCILKIPVME
0901: MKMVCVDILG GLHALTTLSL YVETAPIHKI IFNKAAGFSV LKYFKLRCTT GIPWLKFEAD AMPNLLKLKL VFNAIPPMDQ PLFFTSGQRR HKVRHEHGTA
1001: VISIEHMPGL KEISAQLEGA VSDLEHASRT FISNHPSNPT INMQLVGCSS NVDGSRKRKQ QPDDTLKDEY AKRLEMTADK RIATSLESSS SLDDLRMPVS
1101: QFFDSPAFSI CQPVESSSRL DDAEITPSGS DEGRQHMFDK VVTPSDVGKL NRLVVPKHFS EKYFPLDAAA NDKGMLLSFE DRGGKLWQFR YSYWNSSQSY
1201: VMTKGWSRFV KEKRLNAGDT VSFCRGATEA TRDRLFIDWK CRAVVHDSLP KLDRPSRAIQ KRVRLFGVNL DTQQPQGGEL THDANAGAAG VESSAAASSP
1301: SSSPTEAHSS LDLGM
001: MDLSLAPTTT TSSDQEQDRD QELTSNIGAS SSSGPSGNNN NLPMMMIPPP EKEHMFDKVV TPSDVGKLNR LVIPKQHAER YFPLDSSNNQ NGTLLNFQDR
101: NGKMWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS FQRGIGDESE RSKLYIDWRH RPDMSLVQAH QFGNFGFNFN FPTTSQYSNR FHPLPEYNSV
201: PIHRGLNIGN HQRSYYNTQR QEFVGYGYGN LAGRCYYTGS PLDHRNIVGS EPLVIDSVPV VPGRLTPVML PPLPPPPSTA GKRLRLFGVN MECGNDYNQQ
301: EESWLVPRGE IGASSSSSSA LRLNLSTDHD DDNDDGDDGD DDQFAKKGKS SLSLNFNP
101: NGKMWRFRYS YWNSSQSYVM TKGWSRFVKE KKLDAGDIVS FQRGIGDESE RSKLYIDWRH RPDMSLVQAH QFGNFGFNFN FPTTSQYSNR FHPLPEYNSV
201: PIHRGLNIGN HQRSYYNTQR QEFVGYGYGN LAGRCYYTGS PLDHRNIVGS EPLVIDSVPV VPGRLTPVML PPLPPPPSTA GKRLRLFGVN MECGNDYNQQ
301: EESWLVPRGE IGASSSSSSA LRLNLSTDHD DDNDDGDDGD DDQFAKKGKS SLSLNFNP
Arabidopsis Description
NGA3NGA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3T3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.