Factsheet for VIT_02s0025g00970.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
endoplasmic reticulum 2
plasma membrane 4
cytosol 1
extracellular 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, plasma membrane
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g00930.t01	Wine grape	plasma membrane	86.44	91.8
VIT_02s0025g00950.t01	Wine grape	plasma membrane	88.79	89.51
VIT_16s0050g02480.t01	Wine grape	plasma membrane	64.77	65.2
Zm00001d045279_P001	Maize	plasma membrane	19.93	64.85
CDX71911	Canola	plasma membrane	49.8	63.97
CDY06021	Canola	plasma membrane	49.87	63.83
TraesCS7A01G119800.1	Wheat	plasma membrane	36.64	63.71
PGSC0003DMT400018927	Potato	plasma membrane	53.69	63.34
TraesCS7D01G114300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	43.83	63.34
GSMUA_Achr10P...	Banana	plasma membrane	51.07	62.38
TraesCSU01G159700.1	Wheat	cytosol, peroxisome, plasma membrane	52.42	61.5
TraesCS7A01G119500.1	Wheat	cytosol, peroxisome, plasma membrane	52.42	61.5
TraesCS7D01G115900.1	Wheat	plasma membrane	52.95	61.07
TraesCS2B01G529000.2	Wheat	plasma membrane	52.62	60.59
VIT_16s0050g02280.t01	Wine grape	cytosol, golgi, plasma membrane	52.68	60.15
Solyc08g081890.2.1	Tomato	endoplasmic reticulum, nucleus, plasma membrane	59.6	60.04
AT3G59140.1	Thale cress	plasma membrane	57.65	59.12
TraesCS4A01G227600.1	Wheat	cytosol, golgi, mitochondrion, plasma membrane	45.91	58.71
OQU80926	Sorghum	plasma membrane	58.19	58.5
KXG19351	Sorghum	plasma membrane	58.26	58.49
Bra007434.1-P	Field mustard	golgi, plasma membrane, plastid	56.85	58.37
Os06t0158900-00	Rice	plasma membrane	57.99	58.26
GSMUA_Achr6P31980_001	Banana	plasma membrane	49.93	58.12
TraesCS7A01G118900.2	Wheat	plasma membrane	57.72	58.07
TraesCS7B01G016500.1	Wheat	plasma membrane	57.65	58.0
TraesCSU01G093100.1	Wheat	plasma membrane	57.45	57.8
Zm00001d045269_P004	Maize	plasma membrane	57.32	57.7
TraesCS7D01G116300.2	Wheat	plasma membrane	57.18	57.53
KXG25638	Sorghum	plasma membrane	56.17	57.09
HORVU7Hr1G024960.12	Barley	golgi	56.71	56.9
Zm00001d031447_P003	Maize	plastid	57.05	56.82
TraesCS7A01G119000.1	Wheat	plasma membrane	55.97	55.64
TraesCS2D01G131000.1	Wheat	plastid	55.91	55.57
TraesCS2A01G128500.1	Wheat	plasma membrane	55.44	55.25
TraesCS2B01G150600.1	Wheat	plasma membrane	55.1	54.7
HORVU2Hr1G022560.5	Barley	mitochondrion	54.83	53.29
VIT_09s0002g02440.t01	Wine grape	plasma membrane	40.4	46.06
VIT_01s0010g02440.t01	Wine grape	mitochondrion	23.42	43.14
VIT_07s0005g00260.t01	Wine grape	plasma membrane	35.77	41.8
VIT_07s0005g04460.t01	Wine grape	plastid	39.8	38.71
VIT_19s0015g00040.t01	Wine grape	plasma membrane	27.25	37.66
VIT_15s0021g00220.t01	Wine grape	plasma membrane	37.45	36.95
VIT_10s0003g04470.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	30.74	28.2
VIT_09s0018g00310.t01	Wine grape	plasma membrane	23.89	26.08
VIT_09s0002g02430.t01	Wine grape	plasma membrane	41.74	21.16

Protein Annotations

Gene3D:1.20.1560.10	EntrezGene:100255244	wikigene:100255244	EntrezGene:100260321	wikigene:100260321	EntrezGene:100265535
wikigene:100265535	MapMan:24.1.3.1.2	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ABC1_TM_dom	InterPro:ABC1_TM_sf
InterPro:ABC_transporter-like	InterPro:ABC_transporter_CS	ProteinID:CCB58228	ProteinID:CCB58228.1	UniProt:F6HUR2	EMBL:FN596251
GO:GO:0000166	GO:GO:0000325	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005774	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016887	GO:GO:0042626	GO:GO:0055085	InterPro:IPR003439	InterPro:IPR011527	InterPro:IPR036640
EntrezGene:LOC100255244	wikigene:LOC100255244	EntrezGene:LOC100260321	wikigene:LOC100260321	EntrezGene:LOC100265535	wikigene:LOC100265535
InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00664	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS50929
PANTHER:PTHR24223	PANTHER:PTHR24223:SF263	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF90123	TMHMM:TMhelix
UniParc:UPI0002108BA5	ArrayExpress:VIT_02s0025g00970	EnsemblPlantsGene:VIT_02s0025g00970	EnsemblPlants:VIT_02s0025g00970.t01	unigene:Vvi.18955	RefSeq:XP_002271728
RefSeq:XP_002271728.1	RefSeq:XP_002271761	RefSeq:XP_002271761.2	RefSeq:XP_010658749.1	RefSeq:XP_019071966.1	RefSeq:XP_019071967.1
RefSeq:XP_019071969.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:-:916178..923605

Molecular Weight (calculated)

166295.0 Da

IEP (calculated)

7.696

GRAVY (calculated)

0.219

Length

1490 amino acids

Sequence
(BLAST)

0001: MGESLWTVFC GSSWCWSKIG KICSSGFLAI VCPCSCLNHI LVISVDIIVL LYLLFIFIYK ASAMKILSPQ QSRCFSTMLN SAAFLNGSLG LVYLGLGFWI
0101: VGEKLSEENT ILPLHGWLVV LLQGFTWFFL GLAVRFKRHQ LLHNAGLRLC SVLAFFIAGF PCVTSFWEAI VGDAVSVKVI LDVISFPGAI LLMFCTFTGP
0201: KYAGTDSGFD GAAFYRPLPG EGSSAGDKIN TDASLPPFEK AGLISRMSFW WLNSLMKKGK QKTLEDKDIP QLRREDRAEM CYLMFMEQQN KQKQQSSDSP
0301: SILSTILLWQ WKQILISGFF ALMKVLTLST GPLFLRAFIL VAEGKEAFKY EGYALTGGLF LTKCLESLSE RQWFFRTRLI GLQVRSFLSA AIYQKQLKLS
0401: NTAKGLYSPA QIVSFVIIDA YNIGEFPYWF HQIWSTSLQL CLALIIIYYS LGLATIAALF VVILTVVANS PMGRLQHKYQ KMLMGTQDKR LKAFTEALTN
0501: MKSLKLYAWE THFKNVIERL RKEEFKWLVS VLSQKGYSLI LFWSSPIVVS AITFTACYFI GTTLSASNVF TFMASLRIAQ EPIRLIPDVI TAFIEAKVSL
0601: DRIAKFLDAP ELQNKHVRKM CDGKELEESI FIKSNRISWE DNSTRATLRN INLVVKPGER VAICGEVGSG KSTLLAAILG EVPHINGIVR VYGKIAYVSQ
0701: TAWIPTGTIQ ENILFGSAMD PYRYREAIEK CALVKDLEML PFGDLTEIGE RGVNLSGGQK QRVQLARALY QDADVYLLDD PFSAVDAHTA TSLFNEYVMG
0801: ALSTKTVILV THQVDFLPAF DSVLLMSEGE ILQAATFEQL MHSSQEFQDL VNAHNATVRS ERQPEHDSTQ KSKIQKGEIQ KIYTEKQLRE TSGEQLIKKE
0901: ERETGDTGLK PYLQYLKYSK GFLYFFLATL SHITFIVEQL VQNYWLAANI HNSSVSQLKL ITVYTGIGLS LSLFLLLRSF FVVLLGLGAS QSIFSTLLSS
1001: LFRAPMSFYD STPLGRILSR VSSDLSVVDL DVAFKFTVAV GTTMNAYANF GVLTILAWEL VFVILPTIYL SILIQRYYFA AGKELMRING TTKSFVASHL
1101: SESIAGAMTI RAFGEEDRHF SKNLGFIDMN ASPFFYSFTA NEWLILRLEI LSAIVLSSSG LALTLLHTST SKSGFIGMAL SYGLSANVFL VFSVQNQCHL
1201: ANMIVSVERL EQYTNIPSEA PEVIESNRPP VSWPTIGEVE IYDLKVKYRP NAPLVLHGIS CKFGGGQKIG IVGRTGSGKT TLISILFRLV EPTEGQIIID
1301: GIDIATIGLH DLRSRLGIIP QEPTLFSGSV RYNLDPLSLH TDEEIWVVLE KCQLRGAVQE KEEGLDSLVV QDGSNWSMGQ RQLFCLGRAL LRRSRILVLD
1401: EATASIDNAT DSILQKTIRT EFADCTVITV AHRIPTVMDC TMVLAISDGK LVEYDEPMKL IKEEGSLFGQ LVKEYWSRSS NGSNASGDWL

Best Arabidopsis Sequence Match ( AT3G59140.1 )
(BLAST)

0001: MIENYWTSFC GNHHTSSNCT VRFLQICFGI TLSFLTLCIC LFHKEPPKRI HQFFCLRLVS ALFNGIIGSL DLVLGIWVLR ENHSKPLILW LVILIQGFTW
0101: LFINLIICVR GTRIRKSSLR LLSIFSFFYG LVSSCLSVNN AVFGDELAVR TILDVLLLPG SVLLLLSAYK GYRFDESGES SLYEPLNAGD SNGFSEKADF
0201: DNRVSQFAKA GLFSTLSFWW LNSLIKRGNV KDLEEEDIPE LRKEERAETC YSLFEENLIE QKRRLGSSCQ PSILKVTVLC VWRELLTSGF FAFMKIVAVS
0301: AGPLLLNAFI LVAEGNASFR YEGLVLAVLL FFSKMIESLS QRQWYFRCRI VGLRVRSLLT AAINKKQLRL NNSSRLIHSG SEIMNYATVD AYRIGEFPYW
0401: FHQLWTTSFQ LLIALGILFH SVGVATFSAL AVIILTVLCN APIAKLQNKF QSELMTSQDE RLKACNESLV NMKVLKLYAW ESHFKKVIEK LRNIELKSLK
0501: AVQMRKAYNA VLFWSSPVFV SAATFATCYF LDIPLRASNV FTFVATLRLV QDPVRMIPDV IGVTIQAKVA FSRIATFLEA PELQGGERRR KQRSEGNQNA
0601: IIIKSASFSW EEKGSTKPNL RNVSLEVKFG EKVAVCGEVG SGKSTLLAAI LGETPCVSGT IDFYGTIAYV SQTAWIQTGT IRDNILFGGV MDEHRYRETI
0701: QKSSLDKDLE LLPDGDQTEI GERGVNLSGG QKQRIQLARA LYQDADIYLL DDPFSAVDAH TASSLFQEYV MDALAGKAVL LVTHQVDFLP AFDSVLLMSD
0801: GEITEADTYQ ELLARSRDFQ DLVNAHRETA GSERVVAVEN PTKPVKEINR VISSQSKVLK PSRLIKQEER EKGDTGLRPY IQYMNQNKGY IFFFIASLAQ
0901: VTFAVGQILQ NSWMAANVDN PQVSTLKLIL VYLLIGLCSV LCLMVRSVCV VIMCMKSSAS LFSQLLNSLF RAPMSFYDST PLGRILSRVS SDLSIVDLDV
1001: PFGLIFVVAS SVNTGCSLGV LAIVTWQVLF VSVPMVYLAF RLQKYYFQTA KELMRINGTT RSYVANHLAE SVAGAITIRA FDEEERFFKK SLTLIDTNAS
1101: PFFHSFAANE WLIQRLETVS AIVLASTAFC MILLPTGTFS SGFIGMALSY GLSLNMGLVY SVQNQCYLAN WIISVERLNQ YTHLTPEAPE VIEETRPPVN
1201: WPVTGRVEIS DLQIRYRRES PLVLKGISCT FEGGHKIGIV GRTGSGKTTL ISALFRLVEP VGGKIVVDGV DISKIGVHDL RSRFGIIPQD PTLFNGTVRF
1301: NLDPLCQHSD AEIWEVLGKC QLKEVVQEKE NGLDSLVVED GSNWSMGQRQ LFCLGRAVLR RSRVLVLDEA TASIDNATDL ILQKTIRREF ADCTVITVAH
1401: RIPTVMDCTM VLSISDGRIV EYDEPMKLMK DENSLFGKLV KEYWSHYNSA DSR

Arabidopsis Description

ABCC10ABC transporter C family member 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYS2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.