Factsheet for VIT_04s0023g02170.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70961	Soybean	cytosol	71.27	70.88
KRH75102	Soybean	cytosol	70.72	70.33
PGSC0003DMT400009296	Potato	cytosol	68.23	67.12
Solyc02g084950.2.1	Tomato	cytosol	67.13	65.68
Bra017763.1-P	Field mustard	cytosol, mitochondrion, plastid	64.09	64.62
AT4G36470.1	Thale cress	cytosol	64.36	62.8
CDY64928	Canola	cytosol	46.13	62.55
CDY24787	Canola	cytosol	54.42	62.54
CDX75578	Canola	cytosol	63.81	62.43
Bra011685.1-P	Field mustard	cytosol	61.88	62.4
CDX69227	Canola	cytosol	63.26	61.89
CDY71401	Canola	cytosol	45.58	61.8
CDY24788	Canola	cytosol	61.88	61.71
Bra010556.1-P	Field mustard	cytosol, mitochondrion, nucleus	60.5	61.0
CDY53070	Canola	cytosol	57.46	61.0
Bra010356.1-P	Field mustard	cytosol	58.01	59.49
CDY14232	Canola	cytosol	52.21	59.43
CDY53071	Canola	cytosol	49.45	57.19
Bra010555.1-P	Field mustard	endoplasmic reticulum, extracellular, plastid	47.79	55.27
GSMUA_Achr2P06560_001	Banana	cytosol	51.66	50.95
TraesCS3B01G287100.1	Wheat	plastid	52.21	49.87
EES03488	Sorghum	cytosol	52.76	49.48
HORVU3Hr1G065790.1	Barley	cytosol, nucleus, peroxisome	51.66	49.34
TraesCS3D01G256000.1	Wheat	cytosol	51.38	49.08
Zm00001d043734_P001	Maize	cytosol	51.38	48.95
TraesCS3A01G255100.1	Wheat	cytosol	51.1	48.81
Os01t0701700-01	Rice	extracellular	50.55	48.28
HORVU3Hr1G013850.1	Barley	cytosol	48.34	47.3
VIT_04s0023g02290.t01	Wine grape	cytosol	40.33	46.95
VIT_04s0023g02280.t01	Wine grape	cytosol	42.27	46.79
VIT_18s0001g12880.t01	Wine grape	cytosol	48.07	46.03
VIT_04s0023g02230.t01	Wine grape	cytosol	44.2	45.07
VIT_18s0001g12900.t01	Wine grape	cytosol	46.69	45.07
VIT_04s0023g02310.t01	Wine grape	cytosol	45.03	44.78
VIT_04s0023g02240.t01	Wine grape	cytosol	44.48	44.35
VIT_18s0001g12890.t01	Wine grape	cytosol	34.25	44.29
GSMUA_Achr1P25310_001	Banana	cytosol	48.62	42.82
VIT_04s0023g02220.t01	Wine grape	cytosol	41.71	42.54
VIT_04s0023g02260.t01	Wine grape	plastid	27.9	41.22
GSMUA_Achr1P12690_001	Banana	plastid	50.83	40.71
VIT_04s0023g02200.t01	Wine grape	cytosol	39.78	40.22
VIT_04s0023g03810.t01	Wine grape	cytosol	39.23	39.01
Zm00001d039695_P001	Maize	cytosol	44.75	27.36
VIT_12s0057g01060.t01	Wine grape	cytosol	41.44	27.32

Protein Annotations

Gene3D:1.10.1200.270	EntrezGene:100241069	wikigene:100241069	Gene3D:3.40.50.150	MapMan:50.2.1	ProteinID:CCB44433
ProteinID:CCB44433.1	UniProt:F6GWU7	EMBL:FN594959	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0016740	GO:GO:0032259	EntrezGene:LOC100241069	wikigene:LOC100241069
InterPro:MeTrfase_7	PFAM:PF03492	PANTHER:PTHR31009	PANTHER:PTHR31009:SF9	InterPro:SAM-dependent_MTases	SUPFAM:SSF53335
UniParc:UPI00019830E5	ArrayExpress:VIT_04s0023g02170	EnsemblPlantsGene:VIT_04s0023g02170	EnsemblPlants:VIT_04s0023g02170.t01	RefSeq:XP_002265889	RefSeq:XP_002265889.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:18646469..18648918

Molecular Weight (calculated)

41003.6 Da

IEP (calculated)

4.778

GRAVY (calculated)

-0.277

Length

362 amino acids

Sequence
(BLAST)

001: MDVEKAFHMT GGVGETSYAR NSSLQKKASD VVKHITIETI QQLYLTTTPR SLGIADLGCS SGPNTLSFIK DIFDAVEGTS SQTLLPAPEF RVYLNDLPTN
101: DFNTIFKALP DFYKELRKGS NGRPSIFIAG FPGSFYGRLF PDNCLHFIYS SYGLHWLSQV PPALYDEQGR SINKGNIYIS KSSPPSVSEL YLRQFQEDFA
201: LFLRSRSEEL IEGGRMVLIL LGRRGPDHAD RGNTFFWELL SRSLAILVSW GEVEEEKLHS YAVNFYAPTK EEIEEEVRRE GSFELDRVEM FEIEKDGADD
301: MSYGTQVART VRAIQESMIS LHFGEGIADS LFENYGRLVD EEMAKEDIRP ITFLLVLRKS MI

Best Arabidopsis Sequence Match ( AT4G36470.1 )
(BLAST)

001: MDKKDMEREF YMTGGDGKTS YARNSSLQKK ASDTAKHITL ETLQQLYKET RPKSLGIADL GCSSGPNTLS TITDFIKTVQ VAHHREIPIQ PLPEFSIFLN
101: DLPGNDFNFI FKSLPDFHIE LKRDNNNGDC PSVFIAAYPG SFYGRLFPEN TIHFVYASHS LHWLSKVPTA LYDEQGKSIN KGCVSICSLS SEAVSKAYCS
201: QFKEDFSIFL RCRSKEMVSA GRMVLIILGR EGPDHVDRGN SFFWELLSRS IADLVAQGET EEEKLDSYDM HFYAPSADEI EGEVDKEGSF ELERLEMLEV
301: KKDKGNTEGD ISYGKAVAKT VRAVQESMLV QHFGEKILDK LFDTYCRMVD DELAKEDIRP ITFVVVLRKK L

Arabidopsis Description

At4g36470 [Source:UniProtKB/TrEMBL;Acc:O23234]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.