Factsheet for VIT_17s0000g05700.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065217	Potato	cytosol	80.87	77.94
Solyc03g113190.1.1	Tomato	cytosol	80.77	77.84
KRH56956	Soybean	mitochondrion	75.62	74.44
CDX68168	Canola	cytosol	74.13	71.58
CDX85853	Canola	cytosol	74.03	71.55
Bra003788.1-P	Field mustard	cytosol	74.23	71.47
AT1G74720.1	Thale cress	cytosol	75.12	70.12
EES03181	Sorghum	cytosol	64.82	60.5
Zm00001d011239_P001	Maize	cytosol, mitochondrion, plasma membrane	64.02	59.59
Os01t0587300-00	Rice	cytosol	63.73	59.54
TraesCS7D01G478500.1	Wheat	cytosol	63.92	59.45
TraesCS7A01G491900.1	Wheat	cytosol	63.73	59.32
TraesCS7B01G397000.1	Wheat	cytosol	63.73	59.26
HORVU7Hr1G110440.4	Barley	cytosol, plastid	63.23	58.91
VIT_08s0007g06170.t01	Wine grape	cytosol	41.72	54.18
VIT_04s0023g03270.t01	Wine grape	plasma membrane	8.72	53.01
VIT_08s0007g06140.t01	Wine grape	cytosol	40.24	51.13
VIT_13s0064g01400.t01	Wine grape	cytosol	39.35	50.13
VIT_06s0004g01550.t01	Wine grape	cytosol, peroxisome, plasma membrane	37.76	49.74
VIT_02s0087g00450.t01	Wine grape	extracellular	4.56	49.46
VIT_08s0056g01530.t01	Wine grape	cytosol	48.56	49.2
VIT_07s0005g04770.t01	Wine grape	cytosol	45.99	45.85
VIT_15s0046g03030.t01	Wine grape	cytosol	45.49	45.09
VIT_18s0072g01170.t01	Wine grape	cytosol	44.4	44.71
VIT_13s0064g01380.t01	Wine grape	cytosol	48.76	44.44
VIT_02s0025g03610.t01	Wine grape	cytosol	45.69	29.44

Protein Annotations

EntrezGene:100262158	wikigene:100262158	Gene3D:2.60.40.150	MapMan:35.1	InterPro:C2_dom	InterPro:C2_domain_sf
ProteinID:CCB43114	ProteinID:CCB43114.1	UniProt:F6GTA5	EMBL:FN594950	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000008	InterPro:IPR035892	EntrezGene:LOC100262158	wikigene:LOC100262158	PFAM:PF00168
PFAM:PF08372	InterPro:PRibTrfase_C	PFscan:PS50004	PANTHER:PTHR10024	PANTHER:PTHR10024:SF271	SMART:SM00239
SUPFAM:SSF49562	TMHMM:TMhelix	UniParc:UPI00015CC5E0	ArrayExpress:VIT_17s0000g05700	EnsemblPlantsGene:VIT_17s0000g05700	EnsemblPlants:VIT_17s0000g05700.t01
RefSeq:XP_002267314	RefSeq:XP_002267314.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr17:-:6172962..6176574

Molecular Weight (calculated)

114205.0 Da

IEP (calculated)

7.749

GRAVY (calculated)

-0.272

Length

1009 amino acids

Sequence
(BLAST)

0001: MTTSAQPPPP PSKTQRKLIV EIVDARDLLP KDGQGSSSPY VIVDFDGHKQ RTTTKYRDLN PVWNEKLEFL VSDPDTMEVE ELEIEVFNDK RMGNGGGSSR
0101: KNHFLGRVKL YGSQFAKRGE EGLVYFPLEK KSVFSWIRGE IGLRIYYYDE EVVEETKTPE EPPPQADVKK PPVEESRVQS LEIPVAQMEV VREGSQSPPI
0201: VIIEESPPPP VSLQTEHHVP EEVQSEMRRM VQGVKMGGGE RVRLWRRPNG DYSPKVIRGR FTSESEKMTA YDLVEPMQYL FVRIVKARRL SPTESPCVKI
0301: RTAGHFLRSK PATLRPGESW ENPEWHQVFA LGYNKSDSAS ATLEISVWNG TSEQFLGGVC FDLSDVPVRD PPDSPLAPQW YRLEGADDQN SGIVSGDIQL
0401: SVWIGTQADD AFPESWSSDA PYVAHTRSKV YQSPKLWYLR VTVMEAQDLH IASNLPPLTA PEVRVKAQLG FQSVRTRRGS MSSHSSSFFW HEDLVFVAGE
0501: ALEDHLILLV EDRTAKDALL LGHVVVPVSA IEQRIDERHV ASKWFPLDGG CVGGPYCGRI NLRLCLEGGY HVLDEAAQVC SDFRPTAKQL WKPAVGVLEL
0601: GILGARGLLP MKTKGGGKGS TDAYCVAKYG KKWVRTRTIT DSFDPRWNEQ YTWQVYDPCT VLTIGVFDNL RMFAPDMPEE KPDYRIGKVR IRVSTLESNK
0701: VYTNSYPLLV LQRTGLKKMG EIELAIRFAC PSMLPETCAI YGQPLLPRMH YLRPLGVAQQ EALRGAATKI VAAWLVRSEP PLGPEVVRYM LDADSHTWSM
0801: RKSKANWFRI VAVLAWAVGL AKWLDDIRRW KNPITTVLVH VLYLVLVWYP DLIVPTGFLY IFLIGLWYYR FRPKIPAGMD IRLSQAETVD PDELDEEFDT
0901: IPSSKPPEII RARYDRLRML AARVQTVLGD FATQGERVQA LVSWRDPRAT KLFIGVCLIV TVVLYAVPPK MVAVAIGFYF LRHPMFRDPM PPASLNFFRR
1001: LPSLSDRLM

Best Arabidopsis Sequence Match ( AT1G74720.1 )
(BLAST)

0001: MNTTPFHSDP PPSRIQRKLV VEVVEARNIL PKDGQGSSSA YVVVDFDAQK KRTSTKFRDL NPIWNEMLDF AVSDPKNMDY DELDIEVYND KRFGNGGGRK
0101: NHFLGRVKIY GSQFSRRGEE GLVYFPLEKK SVFSWIRGEI GLKIYYYDEA ADEDTAGGGG GQQQQQQQQQ FHPPQQEADE QQHQQQFHPP PQQMMNIPPE
0201: KPNVVVVEEG RVFESAQSQR YTETHQQPPV VIVEESPPQH VMQGPNDNHP HRNDNHPQRP PSPPPPPSAG EVHYYPPEVR KMQVGRPPGG DRIRVTKRPP
0301: NGDYSPRVIN SKTGGGETTM EKKTHHPYNL VEPMQYLFVR IVKARGLPPN ESAYVKVRTS NHFVRSKPAV NRPGESVDSP EWNQVFALGH NRSDSAVTGA
0401: TLEISAWDAS SESFLGGVCF DLSEVPVRDP PDSPLAPQWY RLEGSGADQN SGRISGDIQL SVWIGTQVDE AFPEAWSSDA PHVAHTRSKV YQSPKLWYLR
0501: VTVLEAQDLH IAPNLPPLTA PEIRVKAQLG FQSARTRRGS MNNHSGSFHW HEDMIFVAGE PLEDCLVLMV EDRTTKEATL LGHAMIPVSS IEQRIDERFV
0601: PSKWHTLEGE GGGGGGGGGP GGGGGGGPYC GRISLRLCLE GGYHVLEEAA HVCSDFRPTA KQLWKPPIGI LELGILGARG LLPMKAKNGG KGSTDAYCVA
0701: KYGKKWVRTR TITDSFDPRW HEQYTWQVYD PCTVLTVGVF DNWRMFSDAS DDRPDTRIGK IRIRVSTLES NKVYTNSYPL LVLLPSGMKK MGEIEVAVRF
0801: ACPSLLPDVC AAYGQPLLPR MHYIRPLGVA QQDALRGAAT KMVAAWLARA EPPLGPEVVR YMLDADSHAW SMRKSKANWY RIVGVLAWAV GLAKWLDNIR
0901: RWRNPVTTVL VHILYLVLVW YPDLVVPTAF LYVVMIGVWY YRFRPKIPAG MDIRLSQAET VDPDELDEEF DTIPSSRRPE VIRARYDRLR ILAVRVQTIL
1001: GDFAAQGERI QALVSWRDPR ATKLFIAICL VITIVLYAVP AKMVAVALGF YYLRHPMFRD TMPTASLNFF RRLPSLSDRL I

Arabidopsis Description

QKYProtein QUIRKY [Source:UniProtKB/Swiss-Prot;Acc:B8XCH5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.