Factsheet for VIT_18s0122g01010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62979	Soybean	cytosol	34.81	83.23
VIT_07s0031g02160.t01	Wine grape	cytosol	72.73	77.56
KRH51582	Soybean	cytosol	74.29	74.29
GSMUA_Achr11P...	Banana	plastid	70.65	73.12
PGSC0003DMT400025874	Potato	cytosol	72.47	72.47
GSMUA_Achr5P11730_001	Banana	cytosol, mitochondrion, nucleus	71.69	72.06
Solyc04g082600.2.1	Tomato	cytosol	71.69	71.69
GSMUA_Achr4P25900_001	Banana	cytosol	70.13	70.68
TraesCS1A01G202300.1	Wheat	plastid	66.75	69.46
KRH60899	Soybean	cytosol	59.48	69.39
TraesCS1B01G216500.1	Wheat	plastid	66.49	69.19
TraesCS1D01G205700.1	Wheat	plastid	66.49	69.19
KXG39006	Sorghum	plastid	66.75	69.09
GSMUA_Achr9P23890_001	Banana	plastid	66.75	68.53
Zm00001d000391_P002	Maize	plastid	65.71	68.01
Zm00001d029772_P001	Maize	plastid	65.71	67.47
HORVU1Hr1G052160.1	Barley	plastid	65.19	62.91
GSMUA_AchrUn_...	Banana	cytosol	71.69	61.47
VIT_11s0118g00700.t01	Wine grape	cytosol	43.38	46.91
VIT_04s0008g04780.t01	Wine grape	cytosol	46.23	46.84
VIT_07s0005g02110.t01	Wine grape	cytosol	47.27	46.19
VIT_05s0020g00390.t01	Wine grape	plastid	40.26	39.74
VIT_17s0000g03100.t01	Wine grape	cytosol, peroxisome, plastid	25.45	25.93
VIT_09s0018g01140.t01	Wine grape	nucleus	23.38	25.14
VIT_04s0008g06720.t01	Wine grape	cytosol, extracellular, mitochondrion	24.16	23.66
VIT_08s0040g00760.t01	Wine grape	cytosol	28.83	16.84

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100265005	wikigene:100265005	MapMan:15.5.38	MapMan:18.4.24.2.7
Gene3D:3.60.40.10	ProteinID:CCB62661	ProteinID:CCB62661.1	UniProt:F6I6U3	EMBL:FN596759	GO:GO:0003674
GO:GO:0003824	GO:GO:0004721	GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169
GO:GO:0046872	InterPro:IPR001932	InterPro:IPR036457	EntrezGene:LOC100265005	wikigene:LOC100265005	PFAM:PF00481
InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	ScanProsite:PS01032	PFscan:PS51746
PANTHER:PTHR13832	PANTHER:PTHR13832:SF528	SMART:SM00332	SUPFAM:SSF81606	TIGR:TC54440	UniParc:UPI00015CC456
ArrayExpress:VIT_18s0122g01010	EnsemblPlantsGene:VIT_18s0122g01010	EnsemblPlants:VIT_18s0122g01010.t01	unigene:Vvi.7674	RefSeq:XP_002273479	RefSeq:XP_002273479.1
RefSeq:XP_002273511	RefSeq:XP_002273511.2	RefSeq:XP_010663992.1	RefSeq:XP_010663993.1	RefSeq:XP_010663994.1	SEG:seg

Description

No Description!

Coordinates

chr18:+:708207..712795

Molecular Weight (calculated)

41947.2 Da

IEP (calculated)

6.009

GRAVY (calculated)

-0.185

Length

385 amino acids

Sequence
(BLAST)

001: MAAGTDFSPP FTLLDVGYSK VNVSVMEDEN SNNSDNLKQL TNGKPPRHLS VMRHCISSAR LLAATDFELG TGMIVKSPPD GKSGFLPVFR SGSCAERGPK
101: QYMEDEHICI DNLIEHLGAT ADFPCPGAFY GVFDGHGGTD AASFVRKNIL KFMVEDSHFP LCVQKAIKSA FVKADHAFAD ASSLDISSGT TALTAFIFGR
201: TMLIANAGDC RAVLGKRGRA LELSRDHKPN CPSERLRIEK LGGVVYDGYL NGQLSVARAL GDWHMKVPKG SACPLSAEPE LQETLLTEDD EFLIMGCDGL
301: WDVMSSQCAV TMARKELMLH NDPERCSKEL VREALKRDTC DNLTVIVICF SPDPPPRIEV PQSRVRRSIS AEGLNFLKGV LDSNS

Best Arabidopsis Sequence Match ( AT2G33700.1 )
(BLAST)

001: MSMDFSPLLT VLEGDFNKDN TSSATEIDTL ENLDDTRQIS KGKPPRHLTS SATRLQLAAN ADVDVCNLVM KSLDDKSEFL PVYRSGSCAE QGAKQFMEDE
101: HICIDDLVNH LGAAIQCSSL GAFYGVFDGH GGTDAAHFVR KNILRFIVED SSFPLCVKKA IKSAFLKADY EFADDSSLDI SSGTTALTAF IFGRRLIIAN
201: AGDCRAVLGR RGRAIELSKD HKPNCTAEKV RIEKLGGVVY DGYLNGQLSV ARAIGDWHMK GPKGSACPLS PEPELQETDL SEDDEFLIMG CDGLWDVMSS
301: QCAVTIARKE LMIHNDPERC SRELVREALK RNTCDNLTVI VVCFSPDPPQ RIEIRMQSRV RRSISAEGLN LLKGVLDGYP

Arabidopsis Description

PP2C27Probable protein phosphatase 2C 27 [Source:UniProtKB/Swiss-Prot;Acc:P93006]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.