Factsheet for VIT_17s0000g03100.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P21740_001	Banana	cytosol, endoplasmic reticulum, peroxisome	62.43	74.68
Solyc03g118890.2.1	Tomato	cytosol, nucleus, peroxisome	58.99	73.6
KRH39122	Soybean	cytosol	60.32	70.15
AT1G18030.1	Thale cress	cytosol, nucleus, peroxisome	62.96	67.81
PGSC0003DMT400014727	Potato	peroxisome	60.05	67.16
CDY26191	Canola	cytosol	61.64	64.19
EER98699	Sorghum	cytosol, peroxisome, plastid	60.58	63.61
Zm00001d020053_P002	Maize	cytosol, nucleus, peroxisome	59.52	62.5
TraesCS5B01G179300.1	Wheat	cytosol, nucleus, peroxisome	58.99	61.94
HORVU5Hr1G055300.9	Barley	nucleus	58.73	61.67
Bra025933.1-P	Field mustard	cytosol	62.17	61.52
TraesCS5D01G185900.1	Wheat	nucleus	58.47	61.39
TraesCS5A01G181600.1	Wheat	nucleus	56.88	59.72
CDY19191	Canola	cytosol, nucleus, peroxisome	61.38	59.03
Os09t0314400-01	Rice	mitochondrion	59.79	54.07
VIT_18s0122g01010.t01	Wine grape	cytosol	25.93	25.45
VIT_07s0031g02160.t01	Wine grape	cytosol	24.07	25.21
VIT_09s0018g01140.t01	Wine grape	nucleus	23.81	25.14
VIT_04s0008g04780.t01	Wine grape	cytosol	25.13	25.0
VIT_07s0005g02110.t01	Wine grape	cytosol	25.93	24.87
VIT_04s0008g06720.t01	Wine grape	cytosol, extracellular, mitochondrion	25.4	24.43
VIT_05s0020g00390.t01	Wine grape	plastid	24.34	23.59
VIT_11s0118g00700.t01	Wine grape	cytosol	21.96	23.31
VIT_08s0040g00760.t01	Wine grape	cytosol	22.49	12.9

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:100257757	wikigene:100257757	Gene3D:3.60.40.10	MapMan:35.1
EMBL:AM465225	ProteinID:CAN61587	ProteinID:CAN61587.1	ProteinID:CBI15508	ProteinID:CBI15508.3	ncoils:Coil
UniProt:D7SJ47	EMBL:FN594950	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004722	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006464
GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015074	GO:GO:0016787
GO:GO:0019538	InterPro:IPR001932	InterPro:IPR036457	EntrezGene:LOC100257757	wikigene:LOC100257757	PFAM:PF00481
InterPro:PP2C	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF348
SMART:SM00332	SUPFAM:SSF81606	UniParc:UPI00015C9409	ArrayExpress:VIT_17s0000g03100	EnsemblPlantsGene:VIT_17s0000g03100	EnsemblPlants:VIT_17s0000g03100.t01
RefSeq:XP_002277457	RefSeq:XP_002277457.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr17:+:2913010..2945502

Molecular Weight (calculated)

41410.9 Da

IEP (calculated)

7.067

GRAVY (calculated)

-0.436

Length

378 amino acids

Sequence
(BLAST)

001: MADEPRSTSL NENTNVVPDS CKRGGDFEDA DSVLVVKKLK TEALSVENAR EVGKRHLDVA SCQEYCKPEV SNQGNNDSQV CEQNGCSQEK QSARKEHFEI
101: EADAAEDKGS RHSMEDAWVV LPDASLEFPG KLRCAHFAIY DGHGGRLAAQ YAQKHLHANV LSAGLPRELL DVKAAKKAIL DGFRRTDESL LQESLAGGWQ
201: DGSTAVCVWI LGQKVFVANI GDAKAVVARS STTDGSENQS DGVSQLKAIV LTREHKAIYP QERARIQKAG GSVSSNGRLQ GRLEVSRAFG DRQFKKVGVV
301: ATPDVHSFDL TEREHFIILG CDGLWGVFGP SDAVDFVHKM LKEGLPVATV SRRLVREAVR ERRCKDNCTA IVIVFRPK

Best Arabidopsis Sequence Match ( AT1G18030.1 )
(BLAST)

001: MLEKESDLTA MEKPNNKHAA DSFSSEDLVS PVKKAKKSEE VSGGGEAVAA VGNREAEEDK PSFVSEEKKE FLVEADVAED KGARHTMEDV WVVLPDASLD
101: FPGTLRCAHF AIYDGHGGRL AAEFAKKHLH LNVLSAGLPR ELLDVKVAKK AILEGFRKTD ELLLQKSVSG GWQDGATAVC VWILDQKVFV ANIGDAKAVL
201: ARSSTTNELG NHTEAGNPLK AIVLTREHKA IYPQERSRIQ KSGGVISSNG RLQGRLEVSR AFGDRHFKKF GVSATPDIHA FELTERENFM ILGCDGLWEV
301: FGPSDAVGFV QKLLKEGLHV STVSRRLVKE AVKERRCKDN CTAIVIVFKR V

Arabidopsis Description

Probable protein phosphatase 2C 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT1]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.