Factsheet for PGSC0003DMT400014727

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 2
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118890.2.1	Tomato	cytosol, nucleus, peroxisome	83.73	93.4
GSMUA_Achr9P21740_001	Banana	cytosol, endoplasmic reticulum, peroxisome	59.47	63.61
VIT_17s0000g03100.t01	Wine grape	cytosol, peroxisome, plastid	67.16	60.05
KRH39122	Soybean	cytosol	56.21	58.46
AT1G18030.1	Thale cress	cytosol, nucleus, peroxisome	59.47	57.27
CDY26191	Canola	cytosol	58.88	54.82
EER98699	Sorghum	cytosol, peroxisome, plastid	57.99	54.44
HORVU5Hr1G055300.9	Barley	nucleus	56.8	53.33
Zm00001d020053_P002	Maize	cytosol, nucleus, peroxisome	56.51	53.06
TraesCS5D01G185900.1	Wheat	nucleus	56.21	52.78
Bra025933.1-P	Field mustard	cytosol	59.47	52.62
TraesCS5B01G179300.1	Wheat	cytosol, nucleus, peroxisome	55.92	52.5
TraesCS5A01G181600.1	Wheat	nucleus	54.14	50.83
CDY19191	Canola	cytosol, nucleus, peroxisome	58.58	50.38
Os09t0314400-01	Rice	mitochondrion	58.58	47.37
PGSC0003DMT400018825	Potato	cytosol	23.96	23.01
PGSC0003DMT400013370	Potato	cytosol	23.96	23.01
PGSC0003DMT400041953	Potato	cytosol, peroxisome, plastid	13.91	22.82
PGSC0003DMT400067098	Potato	cytosol, plastid	23.08	20.8
PGSC0003DMT400025874	Potato	cytosol	22.78	20.0
PGSC0003DMT400059610	Potato	cytosol	21.89	19.95
PGSC0003DMT400069839	Potato	cytosol	23.37	19.75
PGSC0003DMT400003812	Potato	cytosol, mitochondrion	21.89	19.27
PGSC0003DMT400020228	Potato	cytosol	21.3	18.8
PGSC0003DMT400078867	Potato	nucleus	20.71	18.28

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	Gene3D:3.60.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004722	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:IPR001932	InterPro:IPR036457	UniProt:M1A4S2	PFAM:PF00481
EnsemblPlantsGene:PGSC0003DMG400005741	PGSC:PGSC0003DMG400005741	EnsemblPlants:PGSC0003DMT400014727	InterPro:PP2C	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom
PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF348	SMART:SM00332	SUPFAM:SSF81606	TMHMM:TMhelix
UniParc:UPI0002963C38	:	:	:	:	:

Description

Protein phosphatase 2C 8 [Source:PGSC_GENE;Acc:PGSC0003DMG400005741]

Coordinates

chr3:+:58407125..58414141

Molecular Weight (calculated)

36896.9 Da

IEP (calculated)

6.677

GRAVY (calculated)

-0.195

Length

338 amino acids

Sequence
(BLAST)

001: MAESSDSTLL DKESVSTTAN NKREAHSDSS DSVTKKLRSS DTHEEPKAEI TVPKNGSELY FEIEADAAED KGSRQTMEDA SVVLPDADLE FPGKLRCAHF
101: AIYDGHGGRL AAEYARKHLH ANVLSAGLPR ELLDVKAAKK AILEGFRRTD ESLLQESTKG GWQDGAAAVC VWVLGSKVFV ANIGDAKAIL ARSSPTDGSN
201: NTTDGSTPIK AIVLTREHKA IYPQERARIQ KAGGSVSSNG RLQARLEVSR AFGDRQFKKV GVIATPDVHS FDLTERDHFV ILGCDGLWGV SLFFPYCIIL
301: IVMHTTTMLG VPIPGILLFP YDCRFLGQVM LLILFRSY

Best Arabidopsis Sequence Match ( AT1G18030.2 )
(BLAST)

001: MLEKESDLTA MEKPNNKHAA DSFSSEDLVS PVKKAKKSEE VSGGGEAVAA VGNREAEEDK PSFVSEEKKE FLVEADVAED KGARHTMEDV WVVLPDASLD
101: FPGTLRCAHF AIYDGHGGRL AAEFAKKHLH LNVLSAGLPR ELLDVKVAKK AILEGFRKTD ELLLQKSVSG GWQDGATAVC VWILDQKVFV ANIGDAKAVL
201: ARSSTTNELG NHTEAGNPLK AIVLTREHKA IYPQERSRIQ KSGGVISSNG RLQGRLEVSR AFGDRHFKKF GVSATPDIHA FELTERENFM ILGCDGLWEV
301: SVWTK

Arabidopsis Description

Probable protein phosphatase 2C 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT1]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.