Factsheet for PGSC0003DMT400020228

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g010450.1.1	Tomato	cytosol, nucleus, peroxisome	80.42	97.47
PGSC0003DMT400078867	Potato	nucleus	82.51	82.51
VIT_11s0118g00700.t01	Wine grape	cytosol	67.89	73.03
KRH03568	Soybean	cytosol	70.76	70.76
KRH20243	Soybean	cytosol	70.23	70.23
KRH12874	Soybean	cytosol	66.32	67.02
EER89322	Sorghum	cytosol	61.62	66.67
Os02t0799000-01	Rice	cytosol, plastid	61.62	66.67
GSMUA_Achr7P20900_001	Banana	nucleus	62.14	66.48
GSMUA_Achr3P13350_001	Banana	cytosol	50.65	65.99
TraesCS6A01G363900.1	Wheat	cytosol	60.57	65.91
KRH37886	Soybean	cytosol	65.54	65.88
Zm00001d052018_P001	Maize	cytosol	46.48	65.44
TraesCS6B01G398500.1	Wheat	cytosol	60.05	65.34
Zm00001d018394_P003	Maize	endoplasmic reticulum, vacuole	57.44	64.71
TraesCS7A01G143200.2	Wheat	cytosol	59.53	64.59
Os06t0179700-01	Rice	cytosol, plastid	60.31	64.17
Zm00001d045128_P001	Maize	cytosol	59.27	64.12
TraesCS7D01G144400.3	Wheat	cytosol	59.01	64.02
TraesCS7B01G045100.1	Wheat	cytosol	59.01	64.02
HORVU7Hr1G029330.7	Barley	plastid	59.01	63.84
EES05962	Sorghum	cytosol	58.75	63.38
HORVU6Hr1G086560.2	Barley	mitochondrion	60.84	59.9
PGSC0003DMT400067098	Potato	cytosol, plastid	47.52	48.53
PGSC0003DMT400059610	Potato	cytosol	43.86	45.28
PGSC0003DMT400018825	Potato	cytosol	40.99	44.6
PGSC0003DMT400025874	Potato	cytosol	44.65	44.42
PGSC0003DMT400013370	Potato	cytosol	40.21	43.75
PGSC0003DMT400003812	Potato	cytosol, mitochondrion	40.47	40.36
PGSC0003DMT400069839	Potato	cytosol	37.6	36.0
PGSC0003DMT400041953	Potato	cytosol, peroxisome, plastid	16.97	31.55
PGSC0003DMT400014727	Potato	peroxisome	18.8	21.3

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	EntrezGene:102583857	MapMan:15.5.38	Gene3D:3.60.40.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0004721	GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169
GO:GO:0046872	InterPro:IPR001932	InterPro:IPR036457	UniProt:M1AD51	PFAM:PF00481	EnsemblPlantsGene:PGSC0003DMG400007819
PGSC:PGSC0003DMG400007819	EnsemblPlants:PGSC0003DMT400020228	InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom
ScanProsite:PS01032	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF299	SMART:SM00332	SUPFAM:SSF81606
UniParc:UPI000294CAE5	RefSeq:XP_006350065.1	SEG:seg	:	:	:

Description

DNA-binding protein phosphatase 2C [Source:PGSC_GENE;Acc:PGSC0003DMG400007819]

Coordinates

chr12:+:1933098..1937730

Molecular Weight (calculated)

42361.3 Da

IEP (calculated)

5.024

GRAVY (calculated)

-0.270

Length

383 amino acids

Sequence
(BLAST)

001: MCVQDSEEVS EDMENLDISK TDCSEKIRSL QIESEFPNIH KEKFEKNSSS SYAVMRNSFP MESISEDTTI ADRQHILYNK FLPTLRSGEW SDIGGRHDME
101: DTHICIADMA KNFGHSISGE EAISFYGVFD GHGGTGAALF VRDCLPRIIV EDADFPLKLE KVVSKSFLET DAAFANSCSL DSALSSGTTA LTAMIFGRSL
201: LVANAGDCRA VLSRGGLAIE MSKDHRPCCV NERTRVESLG GFVDDGYLNG QLGVTRALGN WHIKGLKEVD KGGPLSAEPE LKLLTLTKED EFLIIGSDGI
301: WDVFRNQNAV DFARRRLQEH NNVKLCCKEI VDEAKKRGAI DNLTVVMVCF HSEPPPPIVF QRSRIRKCIS AEGLQNLKSL LEG

Best Arabidopsis Sequence Match ( AT2G25620.1 )
(BLAST)

001: MEETRGISDP ENGSSSYGGK PPNPLSFSSS SAAAAVYRQT FDGERSLAPC NKRSLVRHSS LVKTMVSDIS VENEFTIEKN KSEFVPATRS GAWSDIGSRS
101: SMEDAYLCVD NFMDSFGLLN SEAGPSAFYG VFDGHGGKHA AEFACHHIPR YIVEDQEFPS EINKVLSSAF LQTDTAFLEA CSLDGSLASG TTALAAILFG
201: RSLVVANAGD CRAVLSRQGK AIEMSRDHKP MSSKERRRIE ASGGHVFDGY LNGQLNVARA LGDFHMEGMK KKKDGSDCGP LIAEPELMTT KLTEEDEFLI
301: IGCDGVWDVF MSQNAVDFAR RRLQEHNDPV MCSKELVEEA LKRKSADNVT AVVVCLQPQP PPNLVAPRLR VHRSFSAEGL KDLQSYLDGL GN

Arabidopsis Description

AtDBP1Probable protein phosphatase 2C 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.