Factsheet for PGSC0003DMT400003812

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g082490.2.1	Tomato	cytosol	98.7	98.7
PGSC0003DMT400059610	Potato	cytosol	77.08	79.78
Bra036796.1-P	Field mustard	nucleus	59.11	72.06
VIT_07s0031g02160.t01	Wine grape	cytosol	65.36	69.53
CDY16304	Canola	nucleus	63.54	68.73
CDX78007	Canola	nucleus	64.58	68.7
CDX73719	Canola	nucleus	64.58	68.7
AT3G51470.1	Thale cress	nucleus	63.54	67.59
CDY33277	Canola	nucleus	62.76	67.51
Bra038901.1-P	Field mustard	nucleus	61.98	66.67
KRH28935	Soybean	nucleus	63.8	65.51
KRH76528	Soybean	cytosol	63.8	65.51
GSMUA_Achr4P25900_001	Banana	cytosol	61.72	62.04
PGSC0003DMT400025874	Potato	cytosol	60.94	60.78
TraesCS1A01G202300.1	Wheat	plastid	58.33	60.54
TraesCS1B01G216500.1	Wheat	plastid	58.07	60.27
GSMUA_Achr11P...	Banana	plastid	58.33	60.22
GSMUA_Achr5P11730_001	Banana	cytosol, mitochondrion, nucleus	59.9	60.05
TraesCS1D01G205700.1	Wheat	plastid	57.81	60.0
KXG39006	Sorghum	plastid	57.03	58.87
Zm00001d000391_P002	Maize	plastid	56.77	58.6
GSMUA_Achr9P23890_001	Banana	plastid	56.77	58.13
Zm00001d029772_P001	Maize	plastid	56.51	57.87
HORVU1Hr1G052160.1	Barley	plastid	58.07	55.89
GSMUA_AchrUn_...	Banana	cytosol	61.98	53.01
PGSC0003DMT400018825	Potato	cytosol	40.89	44.6
PGSC0003DMT400013370	Potato	cytosol	40.89	44.6
PGSC0003DMT400067098	Potato	cytosol, plastid	42.71	43.73
PGSC0003DMT400020228	Potato	cytosol	40.36	40.47
PGSC0003DMT400078867	Potato	nucleus	39.84	39.95
PGSC0003DMT400069839	Potato	cytosol	36.72	35.25
PGSC0003DMT400041953	Potato	cytosol, peroxisome, plastid	17.45	32.52
PGSC0003DMT400014727	Potato	peroxisome	19.27	21.89

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:15.5.38	MapMan:18.4.24.2.7	Gene3D:3.60.40.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0004721	GO:GO:0004722	GO:GO:0005488	GO:GO:0006464	GO:GO:0006470
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0043169
GO:GO:0046872	InterPro:IPR001932	InterPro:IPR036457	UniProt:M0ZMD0	PFAM:PF00481	EnsemblPlantsGene:PGSC0003DMG400001510
PGSC:PGSC0003DMG400001510	EnsemblPlants:PGSC0003DMT400003812	InterPro:PP2C	InterPro:PP2C_BS	InterPro:PPM-type_dom_sf	InterPro:PPM-type_phosphatase_dom
ScanProsite:PS01032	PFscan:PS51746	PANTHER:PTHR13832	PANTHER:PTHR13832:SF304	SMART:SM00332	SUPFAM:SSF81606
UniParc:UPI000294AB8F	SEG:seg	:	:	:	:

Description

Protein phosphatase 2c [Source:PGSC_GENE;Acc:PGSC0003DMG400001510]

Coordinates

chr2:+:38333034..38336937

Molecular Weight (calculated)

41720.8 Da

IEP (calculated)

5.680

GRAVY (calculated)

-0.301

Length

384 amino acids

Sequence
(BLAST)

001: MAPGTNMSPC NGEIENGFCK GNMSAIEENQ EVSDGLSQPN AGKPPRNHPG MRHCISQASL GATSALEPNT VMLGLKSPSS DNCAYVPIFR SGSYSEMGPK
101: QYMEDEHIRI DNLREQVDES KGLLSQGAYY GVFDGHGGID AASFTQNNLL NFILEDSHFP SMVKKAVRNA FQKADNTLAD TKSLDSSSGT TALIALILGR
201: TMLIANAGDS RAVLGKRGRA IELSKDHKPN ATSEKLRIEK LGGVIFDGYL NGQLSVARAL GDWHIKGAKG SKGLLISDPE FEEVVLSEED EFLIIGCDGL
301: WDVMSSQYAV TIVRKELMLH NDPEKCSKFL VKEALKRNCC DNLTVLVICF SPDPPPRIEI PKTTRRRSIS AEGLDLLKGV LSDI

Best Arabidopsis Sequence Match ( AT3G51470.1 )
(BLAST)

001: MAPVTEVSPM INTLEVADDK MTNLSSSGKP PRNISAMRHC NSTAWLTDYE GDERFGAKSP EGVNSTFQPV FRSGSWSDKG PKQSMEDEFI CVDDLTEYIG
101: SSTGAFYGVF DGHGGVDAAS FTKKNIMKLV MEDKHFPTST KKATRSAFVK TDHALADASS LDRSSGTTAL TALILDKTML IANAGDSRAV LGKRGRAIEL
201: SKDHKPNCTS ERLRIEKLGG VIYDGYLNGQ LSVARALGDW HIKGTKGSLC PLSCEPELEE IVLTEEDEYL IMGCDGLWDV MSSQCAVTMV RRELMQHNDP
301: ERCSQALVKE ALQRNSCDNL TVVVVCFSPE APPRIEIPKS HKRRSISAEG LDLLKGVLNE L

Arabidopsis Description

Probable protein phosphatase 2C 47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD02]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.