Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26191 | Canola | cytosol | 84.05 | 81.27 |
| Bra025933.1-P | Field mustard | cytosol | 84.9 | 78.01 |
| CDY19191 | Canola | cytosol, nucleus, peroxisome | 84.33 | 75.32 |
| GSMUA_Achr9P21740_001 | Banana | cytosol, endoplasmic reticulum, peroxisome | 60.68 | 67.41 |
| KRH39122 | Soybean | cytosol | 60.4 | 65.23 |
| Solyc03g118890.2.1 | Tomato | cytosol, nucleus, peroxisome | 55.27 | 64.03 |
| VIT_17s0000g03100.t01 | Wine grape | cytosol, peroxisome, plastid | 67.81 | 62.96 |
| EER98699 | Sorghum | cytosol, peroxisome, plastid | 61.54 | 60.0 |
| PGSC0003DMT400014727 | Potato | peroxisome | 57.27 | 59.47 |
| TraesCS5B01G179300.1 | Wheat | cytosol, nucleus, peroxisome | 60.97 | 59.44 |
| HORVU5Hr1G055300.9 | Barley | nucleus | 60.97 | 59.44 |
| TraesCS5D01G185900.1 | Wheat | nucleus | 60.68 | 59.17 |
| Zm00001d020053_P002 | Maize | cytosol, nucleus, peroxisome | 60.11 | 58.61 |
| TraesCS5A01G181600.1 | Wheat | nucleus | 59.83 | 58.33 |
| Os09t0314400-01 | Rice | mitochondrion | 60.11 | 50.48 |
| AT3G51470.1 | Thale cress | nucleus | 29.06 | 28.25 |
| AT2G33700.1 | Thale cress | cytosol | 28.21 | 26.05 |
| AT2G25070.2 | Thale cress | nucleus | 25.07 | 24.79 |
| AT2G25620.2 | Thale cress | nucleus | 27.64 | 24.74 |
| AT4G31860.1 | Thale cress | cytosol | 24.79 | 24.37 |
| AT1G48040.1 | Thale cress | cytosol | 26.21 | 24.02 |
| AT3G62260.2 | Thale cress | cytosol | 24.79 | 22.66 |
| AT3G17250.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plastid | 23.93 | 19.91 |
| AT2G40860.1 | Thale cress | plastid | 23.08 | 12.31 |
Protein Annotations
| KEGG:04658+3.1.3.16 | KEGG:04660+3.1.3.16 | Gene3D:3.60.40.10 | MapMan:35.1 | EntrezGene:838383 | UniProt:A0A178W966 |
| ProteinID:AAF97840.1 | ProteinID:AEE29665.1 | ProteinID:AEE29666.1 | EMBL:AF428352 | ArrayExpress:AT1G18030 | EnsemblPlantsGene:AT1G18030 |
| RefSeq:AT1G18030 | TAIR:AT1G18030 | RefSeq:AT1G18030-TAIR-G | EnsemblPlants:AT1G18030.1 | TAIR:AT1G18030.1 | Unigene:At.26247 |
| EMBL:BT026023 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004721 | GO:GO:0004722 | GO:GO:0005488 |
| GO:GO:0006464 | GO:GO:0006470 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0046872 | InterPro:IPR001932 | InterPro:IPR036457 | RefSeq:NP_001077557.1 | RefSeq:NP_564045.1 |
| ProteinID:OAP14957.1 | PFAM:PF00481 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | InterPro:PP2C | InterPro:PPM-type_dom_sf | InterPro:PPM-type_phosphatase_dom | PFscan:PS51746 |
| PANTHER:PTHR13832 | PANTHER:PTHR13832:SF348 | UniProt:Q9LMT1 | SMART:SM00332 | SUPFAM:SSF81606 | UniParc:UPI0000162DDE |
| SEG:seg | : | : | : | : | : |
Description
Probable protein phosphatase 2C 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMT1]
Coordinates
chr1:+:6204331..6206988
Molecular Weight (calculated)
38488.0 Da
IEP (calculated)
7.347
GRAVY (calculated)
-0.303
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEKESDLTA MEKPNNKHAA DSFSSEDLVS PVKKAKKSEE VSGGGEAVAA VGNREAEEDK PSFVSEEKKE FLVEADVAED KGARHTMEDV WVVLPDASLD
101: FPGTLRCAHF AIYDGHGGRL AAEFAKKHLH LNVLSAGLPR ELLDVKVAKK AILEGFRKTD ELLLQKSVSG GWQDGATAVC VWILDQKVFV ANIGDAKAVL
201: ARSSTTNELG NHTEAGNPLK AIVLTREHKA IYPQERSRIQ KSGGVISSNG RLQGRLEVSR AFGDRHFKKF GVSATPDIHA FELTERENFM ILGCDGLWEV
301: FGPSDAVGFV QKLLKEGLHV STVSRRLVKE AVKERRCKDN CTAIVIVFKR V
101: FPGTLRCAHF AIYDGHGGRL AAEFAKKHLH LNVLSAGLPR ELLDVKVAKK AILEGFRKTD ELLLQKSVSG GWQDGATAVC VWILDQKVFV ANIGDAKAVL
201: ARSSTTNELG NHTEAGNPLK AIVLTREHKA IYPQERSRIQ KSGGVISSNG RLQGRLEVSR AFGDRHFKKF GVSATPDIHA FELTERENFM ILGCDGLWEV
301: FGPSDAVGFV QKLLKEGLHV STVSRRLVKE AVKERRCKDN CTAIVIVFKR V
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.