Factsheet for Zm00001d006900_P004

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030369_P001	Maize	mitochondrion	19.37	96.3
Zm00001d022181_P004	Maize	plastid	93.85	93.68
Zm00001d037739_P001	Maize	plastid	42.09	93.0
Os07t0622200-01	Rice	plastid	88.08	88.08
TraesCS2D01G170400.1	Wheat	plastid	86.59	86.92
TraesCS2A01G163600.1	Wheat	golgi, plastid	85.85	86.33
TraesCS2B01G189300.1	Wheat	plastid	85.66	85.66
HORVU2Hr1G029870.4	Barley	plastid	79.52	84.72
Zm00001d044716_P001	Maize	cytosol	29.98	76.67
Bra016381.1-P	Field mustard	plastid	72.81	75.63
CDY41485	Canola	plastid	72.81	75.63
CDY21361	Canola	plastid	72.81	75.48
CDY04818	Canola	plastid	72.81	75.48
Bra031389.1-P	Field mustard	plastid	72.81	75.48
AT1G22410.1	Thale cress	plastid	73.93	75.33
CDY68560	Canola	plastid	72.44	75.24
CDX87459	Canola	plastid	72.44	75.1
Zm00001d013618_P002	Maize	plastid	50.28	74.79
CDX88433	Canola	plastid	72.25	74.47
Zm00001d029391_P002	Maize	plastid	74.67	72.91
Zm00001d017655_P001	Maize	plastid	33.15	68.2
Zm00001d020059_P001	Maize	cytosol	30.17	67.78
Solyc01g105390.2.1	Tomato	cytosol	23.46	66.32
Zm00001d052797_P002	Maize	extracellular	59.96	63.64
Bra035024.1-P	Field mustard	cytosol	71.88	52.02
Zm00001d031139_P001	Maize	plastid	5.96	14.55

Protein Annotations

KEGG:00400+2.5.1.54	EntrezGene:100501272	Gene3D:3.20.20.70	MapMan:4.1.5.1.1	UniProt:A0A1D6F1X1	InterPro:Aldolase_TIM
InterPro:DAHP_synth_2	GO:GO:0003674	GO:GO:0003824	GO:GO:0003849	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009073	GO:GO:0009423	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740
InterPro:IPR013785	ProteinID:ONM25429.1	PFAM:PF01474	PANTHER:PTHR21337	PANTHER:PTHR21337:SF18	SUPFAM:SSF51569
TIGRFAMs:TIGR01358	UniParc:UPI000189D8D7	EnsemblPlantsGene:Zm00001d006900	EnsemblPlants:Zm00001d006900_P004	EnsemblPlants:Zm00001d006900_T004	SEG:seg

Description

Phospho-2-dehydro-3-deoxyheptonate aldolase 2 chloroplastic

Coordinates

chr2:-:219013869..219017858

Molecular Weight (calculated)

59002.7 Da

IEP (calculated)

8.574

GRAVY (calculated)

-0.269

Length

537 amino acids

Sequence
(BLAST)

001: MALATNSAAA AAAVSGGVAS QPRRAAVFLP LKRRTISAIH AADPSKNNGP AVPAAAGANS SASAVATPEK KPAAHGKWAV YSWRSKKALQ LPEYPNAEEL
101: DAVLKTIETF PPVVFAGEAR RLEERMAEAA MGRAFVLQGG DCAESFKEFH ANNIRDTFRV LLQMGVVLMF GGQMPVVKVG RMAGQFAKPR SEPFEEKDGV
201: KLPSYRGDNV NGDDFTEKSR VPDPQRMIRA YAQSVATLNL LRAFATGGYA AMQRVTQWNL DFMDHNEQGD RYRELAHRVD DALGFMTASG LTVDHPIMTT
301: TDFWTSHECL LLPYEQALTR EDSTSGLFYD CSAHMLWVGE RTRQLDGAHV EFLRGVANPL GIKVSDKMNP SELVKLIDIL NPSNKPGRIT IITRMGAENM
401: RVKLPHLIRA VRNAGLIVTW ITDPMHGNTI KAPCGLKTRP FDSILAEVRA FFDVHDQEGS HPGGVHLEMT GQNVTECIGG SRTVTFDDLS DRYHTHCDPR
501: LNASQSLELA FIIAERLRKR RMRSGLNSSL PLPPLAF

Best Arabidopsis Sequence Match ( AT1G22410.1 )
(BLAST)

001: MALMNGSMNL SSVKSSMINH RQPNFSSAVS RPTSFRISAV QTDPKTPAAS SASAATTTPA TLTKPVGVNV GKGKWAPESW RTKKALQQPD YPDLAALEAV
101: LETIEAFPPI VFAGEARLLE ERLGQAAMGE AFLLQGGDCA ESFKEFNANN IRDTFRILLQ MGAVLMFGGQ VPVVKVGRMA GQFAKPRSDS FEEKDGVKLP
201: SYRGDNINGD AFDSKSRIPD PQRMIRAYCQ SAATLNLLRA FATGGYAAMQ RVTQWNLDFT ERSEQGDRYR ELANRVDEAL GFMHAAGLTL DHPIMQTTDF
301: WTSHECLLLP YEQSLTRLDS TSGLYYDCSA HMIWVGERTR QLDGAHVEFL RGVANPLGIK VSDKMDPKEL VKLIEILNAD NKPGRITIIT RMGAENMRVK
401: LPHLIREVRR AGQIVTWVSD PMHGNTIKAP CGLKTRPFDA ILAEVRAFFD VHEQEGSHPG GIHLEMTGQN VTECIGGSRT VTFDDLGSRY HTHCDPRLNA
501: SQSLELSFII AERLRKRRIK SQKAFAL

Arabidopsis Description

Phospho-2-dehydro-3-deoxyheptonate aldolase [Source:UniProtKB/TrEMBL;Acc:Q9SK84]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.