Factsheet for TraesCS2B01G189300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G163600.1	Wheat	golgi, plastid	97.58	98.13
TraesCS2D01G170400.1	Wheat	plastid	96.83	97.2
HORVU2Hr1G029870.4	Barley	plastid	86.78	92.46
Zm00001d030369_P001	Maize	mitochondrion	17.88	88.89
EER99720	Sorghum	plastid	87.15	86.67
Zm00001d006900_P004	Maize	plastid	85.66	85.66
Os07t0622200-01	Rice	plastid	85.47	85.47
Zm00001d022181_P004	Maize	plastid	85.47	85.32
CDX87459	Canola	plastid	74.67	77.41
CDX88433	Canola	plastid	74.86	77.16
Bra031389.1-P	Field mustard	plastid	74.3	77.03
CDY04818	Canola	plastid	74.3	77.03
CDY21361	Canola	plastid	74.3	77.03
Bra016381.1-P	Field mustard	plastid	73.74	76.6
CDY41485	Canola	plastid	73.74	76.6
CDY68560	Canola	plastid	73.37	76.21
AT1G22410.1	Thale cress	plastid	74.49	75.9
Zm00001d037739_P001	Maize	plastid	34.26	75.72
Zm00001d044716_P001	Maize	cytosol	28.86	73.81
Zm00001d013618_P002	Maize	plastid	48.04	71.47
Solyc01g105390.2.1	Tomato	cytosol	22.91	64.74
Zm00001d020059_P001	Maize	cytosol	28.68	64.44
Zm00001d017655_P001	Maize	plastid	27.0	55.56
Bra035024.1-P	Field mustard	cytosol	73.37	53.1
TraesCS1B01G229700.1	Wheat	plastid	13.78	14.43

Protein Annotations

EnsemblPlants:TraesCS2B01G189300.1	EnsemblPlantsGene:TraesCS2B01G189300	Gene3D:3.20.20.70	GO:GO:0003674	GO:GO:0003824	GO:GO:0003849
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009073	GO:GO:0009987	GO:GO:0016740
InterPro:Aldolase_TIM	InterPro:DAHP_synth_2	InterPro:IPR013785	KEGG:00400+2.5.1.54	PANTHER:PTHR21337	PANTHER:PTHR21337:SF18
PFAM:PF01474	SEG:seg	SUPFAM:SSF51569	TIGRFAMs:TIGR01358	MapMan:4.1.5.1.1	:

Description

No Description!

Coordinates

chr2B:+:164936804..164939999

Molecular Weight (calculated)

58771.4 Da

IEP (calculated)

8.379

GRAVY (calculated)

-0.260

Length

537 amino acids

Sequence
(BLAST)

001: MALATNTAAA AAAAAALTGG AAQPRRAGFL PLKRRTISAV HAADPARSGA SVPAAAAAKT SSPTVAPDVA ASARPASWSV DSWRKKKALQ LPEYPNKEEL
101: DAVLKTIESF PPIVFAGEAR HLEDRLAEAA MGRAFVLQGG DCAESFKEFN ANNIRDTFRV LLQMGAVLMF GGQVPVVKVG RMAGQFAKPR SDNFEEKDGV
201: KLPSYRGDNV NGDAFDLKSR TPDPDRMIRA YAQSVATLNL LRAFATGGYA AMQRVIQWNL DFMDHNEQGD RYRELAHRVD EALGFMTAAG LGMDHPIMTT
301: TDFWTSHECL LLPYEQALTR EDSTSGLFYD CSAHMVWVGE RTRQLDGAHV EFLRGIANPL GIKVSDKMNP AELVKLIDIL NPSNKPGRIT IITRMGAENM
401: RVKLPHLIRA VRNSGQIVTW ITDPMHGNTI KAPCGLKTRP FDSIMNEVRA FFDVHDQEGS HPGGIHLEMT GQNVTECIGG SRTVTFDDLG DRYHTHCDPR
501: LNASQSLELA FIIAERLRKR RMKSGLANNL PLPPLAF

Best Arabidopsis Sequence Match ( AT1G22410.1 )
(BLAST)

001: MALMNGSMNL SSVKSSMINH RQPNFSSAVS RPTSFRISAV QTDPKTPAAS SASAATTTPA TLTKPVGVNV GKGKWAPESW RTKKALQQPD YPDLAALEAV
101: LETIEAFPPI VFAGEARLLE ERLGQAAMGE AFLLQGGDCA ESFKEFNANN IRDTFRILLQ MGAVLMFGGQ VPVVKVGRMA GQFAKPRSDS FEEKDGVKLP
201: SYRGDNINGD AFDSKSRIPD PQRMIRAYCQ SAATLNLLRA FATGGYAAMQ RVTQWNLDFT ERSEQGDRYR ELANRVDEAL GFMHAAGLTL DHPIMQTTDF
301: WTSHECLLLP YEQSLTRLDS TSGLYYDCSA HMIWVGERTR QLDGAHVEFL RGVANPLGIK VSDKMDPKEL VKLIEILNAD NKPGRITIIT RMGAENMRVK
401: LPHLIREVRR AGQIVTWVSD PMHGNTIKAP CGLKTRPFDA ILAEVRAFFD VHEQEGSHPG GIHLEMTGQN VTECIGGSRT VTFDDLGSRY HTHCDPRLNA
501: SQSLELSFII AERLRKRRIK SQKAFAL

Arabidopsis Description

Phospho-2-dehydro-3-deoxyheptonate aldolase [Source:UniProtKB/TrEMBL;Acc:Q9SK84]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.