Factsheet for Os07t0622200-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 21433289
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99720	Sorghum	plastid	90.88	90.37
Zm00001d030369_P001	Maize	mitochondrion	18.06	89.81
Zm00001d022181_P004	Maize	plastid	89.2	89.03
Zm00001d006900_P004	Maize	plastid	88.08	88.08
TraesCS2A01G163600.1	Wheat	golgi, plastid	85.1	85.58
TraesCS2B01G189300.1	Wheat	plastid	85.47	85.47
TraesCS2D01G170400.1	Wheat	plastid	84.92	85.23
HORVU2Hr1G029870.4	Barley	plastid	79.33	84.52
CDY04818	Canola	plastid	76.16	78.96
Bra031389.1-P	Field mustard	plastid	75.98	78.76
CDY21361	Canola	plastid	75.98	78.76
CDY41485	Canola	plastid	75.61	78.53
Bra016381.1-P	Field mustard	plastid	75.61	78.53
CDY68560	Canola	plastid	75.42	78.34
CDX87459	Canola	plastid	75.42	78.19
CDX88433	Canola	plastid	75.79	78.12
Os08t0484500-01	Rice	plastid	73.37	78.02
Zm00001d037739_P001	Maize	plastid	35.2	77.78
AT1G22410.1	Thale cress	plastid	76.16	77.61
Os03t0389700-01	Rice	plastid	80.07	77.48
Zm00001d044716_P001	Maize	cytosol	29.61	75.71
Zm00001d013618_P002	Maize	plastid	50.09	74.52
Zm00001d020059_P001	Maize	cytosol	29.98	67.36
Solyc01g105390.2.1	Tomato	cytosol	22.72	64.21
Zm00001d017655_P001	Maize	plastid	28.12	57.85
Bra035024.1-P	Field mustard	cytosol	74.67	54.04
Os10t0564400-01	Rice	plastid	14.71	15.55
Os08t0484400-01	Rice	mitochondrion, plastid	12.85	8.5

Protein Annotations

KEGG:00400+2.5.1.54	Gene3D:3.20.20.70	MapMan:4.1.5.1.1	EntrezGene:4343946	EMBL:AK105687	InterPro:Aldolase_TIM
ProteinID:BAF22228.1	ProteinID:BAT02706.1	InterPro:DAHP_synth_2	ProteinID:EAZ40701.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0003849	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009423	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	InterPro:IPR013785	EnsemblPlantsGene:Os07g0622200	EnsemblPlants:Os07t0622200-01
PFAM:PF01474	PANTHER:PTHR21337	PANTHER:PTHR21337:SF18	UniProt:Q0D4J5	SUPFAM:SSF51569	TIGRFAMs:TIGR01358
UniParc:UPI00000A1B73	RefSeq:XP_015646378.1	SEG:seg	:	:	:

Description

phospho-2-dehydro-3-deoxyheptonate aldolase, 3-deoxy-D-arabinoheptulosonate 7-phosphate synthase, 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 23-Deoxy-D-arabino-heptulosonate 7-phosphate synthase, Chorismate biosynthesis (Os07t0622200-01)

Coordinates

chr7:-:25726437..25730027

Molecular Weight (calculated)

59081.7 Da

IEP (calculated)

8.380

GRAVY (calculated)

-0.303

Length

537 amino acids

Sequence
(BLAST)

001: MALATNSAAV SGGAAAAASS APQPRLAATF LPMRRRTVSA VHAADPAKSN GPVQAAAKAS SPSTVAAPEK KPVGLGKWTV DSWKAKKALQ LPEYPSQEEL
101: DSVLKTIETF PPVVFAGEAR HLEERLADAA MGRAFVLQGG DCAESFKEFN ANNIRDTFRI LLQMGAVLMF GGQMPVVKVG RMAGQFAKPR SDSFEERDGV
201: KLPSYRGDNI NGDTFDEKSR VPDPQRMIRA YAQSVATLNL LRAFATGGYA AMQRVTQWNL DFMDHSEQGD RYRELAHRVD EALGFMTAAG LTVDHPIMTT
301: TDFWTSHECL LLPYEQSLTR EDSTSGLFYD CSAHMLWVGE RTRQLDGAHV EFLRGVANPL GIKVSDKMNP RDLVKLIEIL NPSNKPGRIT IITRMGAENM
401: RVKLPHLIRA VRNSGQIVTW ITDPMHGNTI KAPCGLKTRP FDSILAEVRA FFDVHDQEGS HPGGIHLEMT GQNVTECIGG SRTVTFDDLS DRYHTHCDPR
501: LNASQSLELA FIIAERLRRR RMRSGVNSNL PLPPLAF

Best Arabidopsis Sequence Match ( AT1G22410.1 )
(BLAST)

001: MALMNGSMNL SSVKSSMINH RQPNFSSAVS RPTSFRISAV QTDPKTPAAS SASAATTTPA TLTKPVGVNV GKGKWAPESW RTKKALQQPD YPDLAALEAV
101: LETIEAFPPI VFAGEARLLE ERLGQAAMGE AFLLQGGDCA ESFKEFNANN IRDTFRILLQ MGAVLMFGGQ VPVVKVGRMA GQFAKPRSDS FEEKDGVKLP
201: SYRGDNINGD AFDSKSRIPD PQRMIRAYCQ SAATLNLLRA FATGGYAAMQ RVTQWNLDFT ERSEQGDRYR ELANRVDEAL GFMHAAGLTL DHPIMQTTDF
301: WTSHECLLLP YEQSLTRLDS TSGLYYDCSA HMIWVGERTR QLDGAHVEFL RGVANPLGIK VSDKMDPKEL VKLIEILNAD NKPGRITIIT RMGAENMRVK
401: LPHLIREVRR AGQIVTWVSD PMHGNTIKAP CGLKTRPFDA ILAEVRAFFD VHEQEGSHPG GIHLEMTGQN VTECIGGSRT VTFDDLGSRY HTHCDPRLNA
501: SQSLELSFII AERLRKRRIK SQKAFAL

Arabidopsis Description

Phospho-2-dehydro-3-deoxyheptonate aldolase [Source:UniProtKB/TrEMBL;Acc:Q9SK84]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.