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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: vacuole

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 7
  • plasma membrane 5
  • golgi 5
  • cytosol 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:vacuole
Any Predictor:cytosol, plastid, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:vacuole
Plant-mPloc:cytosol
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:vacuole
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY09546 Canola extracellular, vacuole 84.33 84.33
CDY02321 Canola extracellular, vacuole 84.14 84.14
AT1G11770.1 Thale cress vacuole 61.57 61.57
AT1G01980.1 Thale cress plasma membrane, vacuole 61.57 61.0
AT4G20840.1 Thale cress plasma membrane 58.77 58.44
AT4G20830.1 Thale cress vacuole 58.96 55.44
VIT_03s0017g01470.t01 Wine grape vacuole 31.9 54.63
KRH36766 Soybean vacuole 53.92 54.22
KRH36842 Soybean vacuole 53.73 54.03
KRH36840 Soybean nucleus 54.85 53.65
KRH36843 Soybean vacuole 52.99 53.28
KRH11826 Soybean nucleus 53.92 53.12
KRH11827 Soybean vacuole 52.24 52.14
VIT_03s0017g01490.t01 Wine grape vacuole 52.61 51.74
PGSC0003DMT400046308 Potato extracellular 52.24 51.47
KRH42271 Soybean endoplasmic reticulum 54.85 50.95
KRH42272 Soybean vacuole 51.12 50.83
KRH11830 Soybean vacuole 46.64 50.81
Solyc02g022850.1.1 Tomato vacuole 51.12 50.65
KRH58395 Soybean endoplasmic reticulum 54.1 49.83
VIT_03s0017g01420.t01 Wine grape cytosol, peroxisome, vacuole 50.56 49.09
VIT_10s0003g05450.t01 Wine grape extracellular 52.24 48.78
AT1G30700.1 Thale cress vacuole 47.01 47.82
KRH36841 Soybean vacuole 34.51 47.07
AT1G34575.1 Thale cress vacuole 44.96 45.73
TraesCS7D01G368500.1 Wheat plasma membrane, vacuole 43.28 44.79
AT1G30720.1 Thale cress vacuole 44.03 44.78
TraesCS7A01G354100.1 Wheat vacuole 36.19 44.6
GSMUA_Achr3P23450_001 Banana plasma membrane, vacuole 37.13 44.42
AT1G26390.1 Thale cress vacuole 43.47 43.96
AT1G26420.1 Thale cress vacuole 43.28 43.86
Os06t0549900-01 Rice extracellular 42.91 43.56
AT1G30730.1 Thale cress extracellular 42.72 43.54
AT1G26380.1 Thale cress endoplasmic reticulum 43.28 43.36
AT1G30710.1 Thale cress extracellular, plasma membrane, vacuole 42.91 43.31
TraesCS7B01G273700.1 Wheat vacuole 41.98 43.27
AT4G20820.1 Thale cress plastid 42.91 43.23
TraesCS7A01G353900.1 Wheat vacuole 41.79 43.16
EER89910 Sorghum vacuole 42.54 43.1
TraesCS7A01G126600.1 Wheat vacuole 41.79 43.08
TraesCS7B01G273600.1 Wheat vacuole 41.42 42.94
HORVU7Hr1G089160.3 Barley vacuole 41.98 42.86
TraesCS7B01G026000.1 Wheat cytosol 26.49 42.77
TraesCS7A01G354000.1 Wheat vacuole 41.23 42.75
TraesCS7D01G368700.1 Wheat unclear 41.23 42.75
TraesCS7B01G273500.1 Wheat plastid 43.28 42.73
Os06t0548200-01 Rice extracellular 42.54 42.7
TraesCS5B01G302700.1 Wheat vacuole 41.42 42.69
TraesCS7D01G124500.1 Wheat plasma membrane, vacuole 41.42 42.69
TraesCS7D01G368800.1 Wheat vacuole 41.42 42.69
AT2G34790.1 Thale cress golgi, vacuole 42.35 42.67
TraesCS5D01G309100.1 Wheat vacuole 41.42 42.61
Zm00001d037005_P001 Maize vacuole 41.6 42.56
HORVU2Hr1G008270.1 Barley peroxisome 24.63 42.44
KXG20147 Sorghum vacuole 42.35 42.35
AT4G20800.1 Thale cress endoplasmic reticulum, extracellular, vacuole 41.6 42.23
EER89909 Sorghum extracellular, plasma membrane, vacuole 41.42 42.21
TraesCS4B01G391900.1 Wheat vacuole 40.3 42.19
Zm00001d046318_P001 Maize vacuole 41.79 42.18
HORVU7Hr1G089270.1 Barley vacuole 41.79 42.11
AT5G44400.1 Thale cress golgi, vacuole 42.16 42.09
HORVU2Hr1G008330.1 Barley extracellular, plasma membrane, vacuole 41.6 42.08
TraesCS2A01G052700.1 Wheat extracellular, plasma membrane, plastid, vacuole 41.04 42.06
TraesCS2B01G017300.1 Wheat plastid 32.09 42.05
TraesCS2B01G066400.1 Wheat plastid 41.42 42.05
TraesCSU01G034600.1 Wheat vacuole 40.3 41.94
AT1G26400.1 Thale cress golgi, vacuole 41.23 41.94
TraesCS2B01G066900.1 Wheat nucleus, unclear 41.23 41.94
KXG26140 Sorghum plasma membrane 41.79 41.87
TraesCS5A01G555000.1 Wheat plasma membrane, vacuole 40.3 41.86
AT5G44390.1 Thale cress vacuole 42.16 41.7
TraesCS7D01G393900.1 Wheat vacuole 40.67 41.68
TraesCS2A01G051500.1 Wheat peroxisome 26.49 41.64
HORVU2Hr1G008300.1 Barley plastid 40.86 41.63
TraesCS7D01G369200.1 Wheat extracellular, vacuole 41.04 41.59
TraesCS2D01G052300.1 Wheat plastid 40.86 41.56
TraesCS2A01G052600.1 Wheat vacuole 41.23 41.54
TraesCS7A01G353700.1 Wheat extracellular, vacuole 41.23 41.54
AT1G30760.2 Thale cress golgi 42.72 41.49
TraesCS2A01G052800.1 Wheat plastid, vacuole 40.49 41.33
TraesCS7A01G400100.1 Wheat unclear 40.49 41.33
AT5G44410.1 Thale cress golgi 41.23 41.31
Os06t0548100-00 Rice golgi 41.23 41.31
TraesCS4B01G358600.1 Wheat golgi 40.3 41.3
AT2G34810.1 Thale cress vacuole 41.6 41.3
TraesCS2B01G066800.1 Wheat vacuole 40.67 41.29
TraesCS2D01G052700.1 Wheat unclear 40.67 41.29
HORVU4Hr1G086520.1 Barley plasma membrane, vacuole 39.74 41.2
EER89908 Sorghum plasma membrane, vacuole 41.42 41.19
TraesCS1D01G443200.1 Wheat cytosol 24.25 41.14
AT1G26410.1 Thale cress golgi 42.35 41.12
Os06t0549300-00 Rice extracellular 40.11 41.11
Os06t0549633-00 Rice vacuole 40.49 41.1
TraesCS2D01G052500.1 Wheat endoplasmic reticulum, extracellular, vacuole 40.49 41.1
HORVU2Hr1G000540.1 Barley golgi, vacuole 41.6 41.07
TraesCS5A01G261400.1 Wheat vacuole 40.11 40.95
HORVU7Hr1G093940.1 Barley vacuole 40.49 40.94
HORVU2Hr1G122590.1 Barley vacuole 40.86 40.93
HORVU3Hr1G020240.1 Barley extracellular, plasma membrane, vacuole 40.3 40.75
TraesCS2B01G572400.1 Wheat unclear 40.3 40.75
TraesCS2A01G052900.1 Wheat unclear 40.11 40.72
TraesCS4D01G101000.1 Wheat golgi 41.23 40.7
Os06t0549600-01 Rice extracellular 39.93 40.68
TraesCS2A01G542600.1 Wheat vacuole 40.3 40.68
HORVU2Hr1G000530.1 Barley plasma membrane, vacuole 33.21 40.64
TraesCS5D01G268800.1 Wheat vacuole 39.74 40.57
TraesCS3B01G132200.1 Wheat extracellular, plasma membrane, vacuole 39.93 40.53
HORVU7Hr1G089280.1 Barley mitochondrion, peroxisome, plasma membrane 40.67 40.52
EER89907 Sorghum plasma membrane, vacuole 39.74 40.49
TraesCS4A01G212100.1 Wheat vacuole 40.86 40.41
TraesCS7D01G369000.1 Wheat extracellular, vacuole 39.18 40.38
HORVU7Hr1G089190.1 Barley vacuole 39.55 40.38
Zm00001d037008_P001 Maize golgi, vacuole 38.43 40.31
Zm00001d046319_P001 Maize vacuole 39.55 40.3
GSMUA_Achr3P23470_001 Banana extracellular, plasma membrane, vacuole 31.16 40.24
TraesCS7B01G273900.1 Wheat vacuole 38.99 40.19
HORVU2Hr1G008310.1 Barley golgi, vacuole 40.67 40.15
TraesCS2D01G006000.1 Wheat plastid 37.87 40.12
TraesCS2B01G145300.1 Wheat plasma membrane 42.72 40.03
HORVU4Hr1G017270.1 Barley vacuole 40.49 39.96
Os06t0548800-01 Rice extracellular 39.55 39.92
TraesCS4B01G104000.1 Wheat vacuole 40.49 39.89
KXG20146 Sorghum extracellular 39.55 39.77
Zm00001d046322_P001 Maize extracellular 39.37 39.74
TraesCS7B01G273800.1 Wheat plasma membrane 38.62 39.73
TraesCS3D01G113700.1 Wheat extracellular, plasma membrane, vacuole 38.99 39.66
TraesCS7B01G388200.1 Wheat extracellular, plasma membrane, vacuole 38.62 39.66
TraesCS7A01G353800.1 Wheat vacuole 38.43 39.62
TraesCS2D01G052400.1 Wheat vacuole 29.66 39.55
TraesCS2B01G172300.1 Wheat vacuole 38.99 39.51
TraesCS7D01G369100.1 Wheat plasma membrane, vacuole 41.6 39.47
TraesCS7A01G484600.1 Wheat extracellular, plasma membrane, vacuole 38.43 39.46
TraesCS1B01G469800.1 Wheat vacuole 39.55 39.41
HORVU2Hr1G021650.2 Barley golgi, mitochondrion, plastid, vacuole 42.54 39.38
TraesCS1D01G338700.1 Wheat plasma membrane 39.37 39.37
TraesCS3A01G111600.1 Wheat vacuole 38.99 39.36
TraesCS2D01G151500.1 Wheat vacuole 38.81 39.32
TraesCS1A01G433900.1 Wheat endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 39.37 39.29
TraesCS7D01G472000.1 Wheat vacuole 38.25 39.27
TraesCS7A01G353600.1 Wheat cytosol, nucleus, peroxisome 16.04 39.27
KXG28418 Sorghum vacuole 38.62 39.2
TraesCS2B01G016900.1 Wheat vacuole 37.87 39.19
HORVU1Hr1G092680.1 Barley golgi, vacuole 39.18 39.18
TraesCS2A01G123200.1 Wheat plasma membrane, vacuole 41.79 39.09
TraesCS1D01G433600.1 Wheat vacuole 39.37 39.07
TraesCS2D01G126200.1 Wheat plasma membrane, vacuole 41.79 38.96
AT5G44380.2 Thale cress mitochondrion, plastid 42.16 38.9
Os11t0495950-00 Rice plasma membrane, vacuole 38.99 38.7
AT5G44360.2 Thale cress golgi 39.55 38.69
Zm00001d049169_P001 Maize vacuole 38.06 38.64
TraesCS1B01G456900.1 Wheat vacuole 35.82 38.55
AT4G20860.1 Thale cress vacuole 38.06 38.49
HORVU2Hr1G013930.1 Barley golgi, vacuole 39.18 38.46
TraesCS2D01G543700.1 Wheat unclear 40.11 38.32
EES13185 Sorghum vacuole 38.99 38.28
TraesCS1A01G424100.1 Wheat vacuole 36.38 38.24
KXG20949 Sorghum vacuole 38.43 38.08
TraesCS2A01G005700.1 Wheat vacuole 35.07 37.98
TraesCS3B01G070000.1 Wheat mitochondrion 19.96 37.94
TraesCS2D01G126400.1 Wheat golgi, vacuole 40.67 37.65
TraesCS2A01G123400.1 Wheat plasma membrane, vacuole 40.3 37.18
TraesCS2B01G145500.1 Wheat vacuole 40.3 37.11
TraesCS7D01G368900.1 Wheat cytosol, peroxisome, plasma membrane 16.42 36.82
TraesCS4B01G222500.1 Wheat plasma membrane 38.81 36.75
TraesCS4D01G223000.1 Wheat plasma membrane 38.62 36.57
TraesCS4A01G081300.1 Wheat unclear 38.25 36.28
HORVU4Hr1G062830.1 Barley mitochondrion, peroxisome, plasma membrane 39.18 36.14
AT5G44440.2 Thale cress golgi 40.49 35.99
Os02t0235900-01 Rice plasma membrane, vacuole 37.87 35.8
GSMUA_Achr3P23440_001 Banana extracellular, plasma membrane 33.96 35.41
Zm00001d037009_P001 Maize plasma membrane 38.43 35.15
Zm00001d016199_P001 Maize mitochondrion 36.57 34.94
HORVU7Hr1G089210.1 Barley mitochondrion 39.93 34.85
KXG29886 Sorghum mitochondrion 36.94 34.08
HORVU7Hr1G089260.1 Barley mitochondrion 29.1 32.1
KXG29885 Sorghum plastid 29.85 31.94
HORVU7Hr1G026630.1 Barley plastid 29.85 31.56
Protein Annotations
Gene3D:3.30.43.10Gene3D:3.30.465.50Gene3D:3.40.462.20MapMan:50.1.1EntrezGene:839954UniProt:A0A1P8ATP1
ProteinID:AAD25761.1ProteinID:AEE31266.1ProteinID:ANM60000.1ArrayExpress:AT1G30740EnsemblPlantsGene:AT1G30740RefSeq:AT1G30740
TAIR:AT1G30740RefSeq:AT1G30740-TAIR-GEnsemblPlants:AT1G30740.2Unigene:At.49309InterPro:BBEEMBL:DQ446310
EMBL:DQ652872InterPro:FAD-bd_2InterPro:FAD-bd_2-like_sfInterPro:FAD-bd_2_sub1GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005575GO:GO:0005576GO:GO:0005618GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005773GO:GO:0008150GO:GO:0008152GO:GO:0009506
GO:GO:0016491GO:GO:0016614GO:GO:0030312GO:GO:0050660GO:GO:0055114GO:GO:0071949
InterPro:IPR016166InterPro:IPR016167RefSeq:NP_001322315.1RefSeq:NP_174361.1InterPro:Oxid_FAD_bind_NPFAM:PF01565
PFAM:PF08031PFscan:PS51387PANTHER:PTHR32448PANTHER:PTHR32448:SF34SUPFAM:SSF56176SignalP:SignalP-noTM
UniParc:UPI000848C676SEG:seg::::
Description
FAD-binding Berberine family protein [Source:TAIR;Acc:AT1G30740]
Coordinates
chr1:+:10902995..10904739
Molecular Weight (calculated)
60246.4 Da
IEP (calculated)
9.029
GRAVY (calculated)
-0.202
Length
536 amino acids
Sequence
(BLAST)
001: MNKMYLIFLL FFAASYSMSL SSADSVTIYE DFVQCFKNVT TISDIDLSDV VLPRTSISFT PTLRAYIRNA RFNTSSMPKP SIIIVPRVDS HVQAAVICAK
101: TLNLQLKIRS GGHDYDGLSY VSAVTFLVLD LSNFRNITVD LNDGGGSAWV QTGATLGELY YRIWEKSEVH AFPAGVCPTV GVGGHVSGGG YGHMIRKFGL
201: TIDHVVDATI VDANGQIHDR KSMEEDLFWA IRGGGGGSFG VVLAFKVKLV TVPKTVTVFR VDKSVDENAL DMVYKWQFVA PRTDPGLFMR VLLSSPTQNK
301: TSTVNTKLRA LYLGKADDVV LKMAEEFPEL GLKKEDCKEM TWIQSLLWWM NHVDVDKVKP EILLEREPDS AKFLKRKSDY VEKEMTKPEL NRLFQKLATL
401: DRTGLVLNPY GGSLNVTAVN ATAFPHRHKL YKIQHSVTWP DAGPEAERLY IGNLRTTYNI MTPFVSKNPR SSYLNYRDID IGVNDHGADG YRKGEIYGRK
501: YFGENFDRLV RVKTAVDPDN FFRNEQSIPT LPPNRR
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.