Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51910 | Canola | nucleus | 72.76 | 81.2 |
| CDX82566 | Canola | nucleus | 80.29 | 80.87 |
| Bra001480.1-P | Field mustard | nucleus | 80.29 | 80.87 |
| Bra034713.1-P | Field mustard | nucleus | 78.14 | 79.27 |
| CDY60115 | Canola | nucleus | 78.14 | 78.14 |
| CDY23558 | Canola | nucleus | 76.7 | 78.1 |
| AT1G56010.2 | Thale cress | nucleus | 72.76 | 62.65 |
| KRH43817 | Soybean | nucleus | 56.99 | 52.65 |
| KRH13649 | Soybean | nucleus | 55.56 | 51.16 |
| VIT_19s0027g00230.t01 | Wine grape | nucleus | 51.97 | 49.15 |
| GSMUA_Achr5P00500_001 | Banana | nucleus | 45.88 | 46.72 |
| GSMUA_Achr9P10210_001 | Banana | nucleus | 40.14 | 46.47 |
| TraesCS7B01G365300.1 | Wheat | nucleus | 50.18 | 45.9 |
| Os06t0675600-01 | Rice | nucleus | 49.82 | 45.72 |
| GSMUA_Achr6P30050_001 | Banana | nucleus | 46.59 | 45.61 |
| GSMUA_Achr8P33310_001 | Banana | nucleus | 46.24 | 45.58 |
| GSMUA_Achr3P23360_001 | Banana | nucleus | 45.52 | 45.36 |
| HORVU7Hr1G106480.1 | Barley | nucleus | 49.82 | 45.28 |
| TraesCS7D01G452500.1 | Wheat | nucleus | 49.82 | 45.13 |
| TraesCS7B01G364600.1 | Wheat | nucleus | 49.46 | 44.95 |
| TraesCS7A01G464100.1 | Wheat | nucleus | 49.46 | 44.95 |
| TraesCS7A01G464800.1 | Wheat | nucleus | 49.46 | 44.81 |
| TraesCS7D01G451700.1 | Wheat | nucleus | 49.46 | 44.23 |
| GSMUA_Achr6P31350_001 | Banana | nucleus | 46.95 | 43.96 |
| EER88807 | Sorghum | nucleus | 48.03 | 43.65 |
| Zm00001d014405_P001 | Maize | nucleus | 47.67 | 43.61 |
| GSMUA_Achr11P... | Banana | nucleus | 43.37 | 43.37 |
| Solyc07g066330.2.1 | Tomato | nucleus | 53.05 | 43.27 |
| GSMUA_Achr5P26640_001 | Banana | nucleus | 46.24 | 43.14 |
| TraesCS2B01G484100.1 | Wheat | cytosol, nucleus, plastid | 44.09 | 42.71 |
| TraesCS5D01G059700.2 | Wheat | cytosol, nucleus, peroxisome | 45.88 | 42.24 |
| PGSC0003DMT400056916 | Potato | nucleus | 52.69 | 42.12 |
| Os08t0200600-01 | Rice | nucleus | 44.09 | 41.98 |
| TraesCS5A01G049100.2 | Wheat | cytosol, nucleus, peroxisome | 45.88 | 41.83 |
| TraesCS5B01G054200.2 | Wheat | cytosol, nucleus, peroxisome | 45.88 | 41.69 |
| TraesCS7D01G302000.1 | Wheat | cytosol | 43.37 | 41.58 |
| TraesCS7A01G305200.1 | Wheat | cytosol | 43.01 | 41.52 |
| TraesCS7B01G205600.1 | Wheat | cytosol | 43.01 | 41.1 |
| EES13494 | Sorghum | cytosol, nucleus, plastid | 42.29 | 40.83 |
| Zm00001d024268_P001 | Maize | cytosol, nucleus, plastid | 41.22 | 40.78 |
| GSMUA_Achr9P26140_001 | Banana | cytosol | 45.88 | 40.63 |
| GSMUA_Achr8P07120_001 | Banana | nucleus | 43.37 | 40.2 |
| HORVU2Hr1G103930.1 | Barley | mitochondrion | 42.29 | 40.0 |
| TraesCS2D01G462900.1 | Wheat | cytosol, nucleus, plastid | 41.58 | 39.73 |
| OQU82346 | Sorghum | cytosol, nucleus, plastid | 43.37 | 39.16 |
| Zm00001d002285_P001 | Maize | cytosol, nucleus, plastid | 43.37 | 38.17 |
| HORVU7Hr1G106660.9 | Barley | nucleus, plastid | 49.1 | 37.74 |
| Os12t0610600-01 | Rice | nucleus | 44.44 | 37.24 |
| OQU79579 | Sorghum | cytosol, nucleus, peroxisome | 43.73 | 36.53 |
| HORVU7Hr1G072670.3 | Barley | cytosol, plastid | 43.73 | 35.78 |
| Zm00001d041472_P001 | Maize | cytosol, nucleus, peroxisome | 43.37 | 35.69 |
| TraesCS2A01G462500.1 | Wheat | plastid | 42.29 | 35.22 |
| AT5G39610.1 | Thale cress | cytosol | 35.13 | 34.39 |
| AT5G07680.1 | Thale cress | nucleus | 39.43 | 33.43 |
| AT3G18400.1 | Thale cress | nucleus | 36.2 | 32.17 |
| AT5G61430.1 | Thale cress | nucleus | 38.35 | 31.85 |
| AT3G15170.1 | Thale cress | nucleus | 35.13 | 31.61 |
| KXG28193 | Sorghum | cytosol | 31.18 | 31.07 |
| AT3G29035.1 | Thale cress | nucleus | 35.13 | 30.82 |
| AT2G24430.1 | Thale cress | nucleus | 34.77 | 30.7 |
| AT5G18270.1 | Thale cress | nucleus | 36.2 | 30.15 |
| AT3G04060.1 | Thale cress | nucleus | 35.13 | 28.99 |
| AT4G28530.1 | Thale cress | nucleus | 36.2 | 28.69 |
| AT1G76420.1 | Thale cress | cytosol | 33.69 | 28.14 |
| AT5G53950.1 | Thale cress | nucleus | 36.92 | 27.47 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | EntrezGene:3768816 | ProteinID:AEE75269.1 | ArrayExpress:AT3G12977 | EnsemblPlantsGene:AT3G12977 |
| RefSeq:AT3G12977 | TAIR:AT3G12977 | RefSeq:AT3G12977-TAIR-G | EnsemblPlants:AT3G12977.1 | TAIR:AT3G12977.1 | ProteinID:BAB02506.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003441 | InterPro:IPR036093 | InterPro:NAC-dom |
| InterPro:NAC_dom_sf | RefSeq:NP_001030683.2 | PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31744 | PANTHER:PTHR31744:SF5 |
| UniProt:Q9LSI1 | SUPFAM:SSF101941 | UniParc:UPI000009FBAA | : | : | : |
Description
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LSI1]
Coordinates
chr3:+:4143524..4146037
Molecular Weight (calculated)
31947.6 Da
IEP (calculated)
8.686
GRAVY (calculated)
-0.730
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MEETEKNKGS ISMVEANLPP GFRFHPRDDE LVCDYLMRRT VRSLYQPVVL IDVDLNKCEP WDIPQTARVG GKEWYFYSQK DRKYATGYRT NRATATGYWK
101: ATGKDRAIQR NGGLVGMRKT LVFYRGRSPK GRKTDWVMHE FRLQGKLLHH SPNSLEEEWV LCRVFHKNSN GADIDDITRS CSDATASAFM DSYINFDHHH
201: IINQHVPCFS NNLSHNQTNQ SGLISKNSSP LFNASPDQMI LRTLLSQLTK KVEESQSRGD GSSESQLTDI GIPSHAWNY
101: ATGKDRAIQR NGGLVGMRKT LVFYRGRSPK GRKTDWVMHE FRLQGKLLHH SPNSLEEEWV LCRVFHKNSN GADIDDITRS CSDATASAFM DSYINFDHHH
201: IINQHVPCFS NNLSHNQTNQ SGLISKNSSP LFNASPDQMI LRTLLSQLTK KVEESQSRGD GSSESQLTDI GIPSHAWNY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.