Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- endoplasmic reticulum 6
- plasma membrane 4
- vacuole 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G10900.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 92.4 | 74.51 |
| CDX73899 | Canola | extracellular | 53.5 | 61.75 |
| AT3G10890.1 | Thale cress | extracellular | 69.6 | 55.31 |
| Bra001383.1-P | Field mustard | extracellular | 66.57 | 52.77 |
| AT5G66460.1 | Thale cress | vacuole | 53.5 | 40.84 |
| KRH28716 | Soybean | vacuole | 50.76 | 39.29 |
| VIT_04s0023g02130.t01 | Wine grape | vacuole | 51.67 | 39.26 |
| OQU79706 | Sorghum | vacuole | 37.08 | 39.1 |
| EES01213 | Sorghum | golgi, vacuole | 48.33 | 36.81 |
| TraesCS3D01G241300.1 | Wheat | extracellular | 47.42 | 36.71 |
| TraesCS3B01G269200.1 | Wheat | extracellular | 47.42 | 36.71 |
| TraesCS3A01G241000.1 | Wheat | golgi, vacuole | 47.42 | 36.71 |
| GSMUA_Achr6P27200_001 | Banana | golgi, vacuole | 45.29 | 36.52 |
| Zm00001d043965_P001 | Maize | extracellular, vacuole | 47.11 | 36.38 |
| GSMUA_Achr4P02940_001 | Banana | golgi, vacuole | 47.11 | 36.38 |
| PGSC0003DMT400009055 | Potato | extracellular, golgi, vacuole | 46.81 | 35.57 |
| KRH76746 | Soybean | plasma membrane | 50.76 | 35.53 |
| Solyc02g084990.2.1 | Tomato | nucleus | 46.81 | 35.48 |
| HORVU3Hr1G060060.8 | Barley | golgi, vacuole | 48.02 | 35.43 |
| GSMUA_Achr9P06930_001 | Banana | extracellular | 45.9 | 35.28 |
| GSMUA_Achr4P07870_001 | Banana | mitochondrion | 41.03 | 35.06 |
| Os01t0663300-01 | Rice | endoplasmic reticulum, golgi, vacuole | 42.86 | 34.99 |
| AT1G02310.2 | Thale cress | golgi, vacuole | 41.64 | 31.79 |
| AT5G01930.1 | Thale cress | endoplasmic reticulum | 43.16 | 31.7 |
| AT4G28320.1 | Thale cress | vacuole | 38.91 | 29.7 |
| AT2G20680.1 | Thale cress | plasma membrane, vacuole | 38.91 | 29.56 |
Protein Annotations
| MapMan:21.2.3.2.2 | Gene3D:3.20.20.80 | ArrayExpress:AT3G30540 | EnsemblPlantsGene:AT3G30540 | RefSeq:AT3G30540 | TAIR:AT3G30540 |
| RefSeq:AT3G30540-TAIR-G | EnsemblPlants:AT3G30540.1 | TAIR:AT3G30540.1 | Unigene:At.53601 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004553 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:Glyco_hydro_5 |
| InterPro:Glycoside_hydrolase_SF | PFAM:PF00150 | PANTHER:PTHR31451 | PANTHER:PTHR31451:SF18 | SUPFAM:SSF51445 | SignalP:SignalP-noTM |
| UniParc:UPI0001E92DAD | : | : | : | : | : |
Description
Glycosyl hydrolase superfamily protein [Source:TAIR;Acc:AT3G30540]
Coordinates
chr3:-:12144792..12146502
Molecular Weight (calculated)
37110.2 Da
IEP (calculated)
8.276
GRAVY (calculated)
-0.258
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MKCLCFIVLL AIVIAQSYVG VEAAPSDGFV SRNGVQFILN GKPFYANGFN AYWLAYEATD PATRFKITNV FQNATSLAEA KRVGIKLIIP LVNNWDDYGG
101: KKQYVDWARS KGEMVSSNDD FYRNPVIKEF YKNHVKTMLN RVNTFTKVAY KDEPASMAWQ LMNEPRCGVD RSGKTLMAWI NEMALFVKSV DPNHLLSTGH
201: EGFYGDSSPE RKNSLNPVSA NTVGADFIAN HNIDAIDFAS MHCGSDLWFQ RLDQNSRLAF IKRWLEGHIE DAQNNLKKPV ILAEFGLGSD TPRYTLANRD
301: DVFTTTYDII YDIYAKRRLG RGSIVLGGY
101: KKQYVDWARS KGEMVSSNDD FYRNPVIKEF YKNHVKTMLN RVNTFTKVAY KDEPASMAWQ LMNEPRCGVD RSGKTLMAWI NEMALFVKSV DPNHLLSTGH
201: EGFYGDSSPE RKNSLNPVSA NTVGADFIAN HNIDAIDFAS MHCGSDLWFQ RLDQNSRLAF IKRWLEGHIE DAQNNLKKPV ILAEFGLGSD TPRYTLANRD
301: DVFTTTYDII YDIYAKRRLG RGSIVLGGY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.