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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY00055 Canola plastid 84.89 85.1
CDY19946 Canola plastid 84.13 84.34
Bra036169.1-P Field mustard plastid 84.13 84.34
Bra037485.1-P Field mustard cytosol 39.8 80.61
VIT_00s0333g00020.t01 Wine grape cytosol 67.51 79.29
KRH66196 Soybean endoplasmic reticulum, plastid 66.75 67.95
KRH07361 Soybean plastid 65.74 67.62
Solyc09g056160.2.1 Tomato extracellular 65.74 66.41
PGSC0003DMT400036221 Potato endoplasmic reticulum, golgi 65.74 66.41
CDX85338 Canola plastid 52.14 64.49
Zm00001d049152_P001 Maize plastid 60.2 63.73
GSMUA_Achr8P28390_001 Banana plastid 63.98 63.66
OQU90746 Sorghum plastid 59.7 63.37
TraesCS5D01G074600.1 Wheat plastid 59.95 62.8
TraesCS5B01G069000.2 Wheat plastid 59.7 62.53
Os11t0425300-01 Rice plastid 59.95 62.3
TraesCS5A01G063400.3 Wheat plastid 58.69 60.68
Protein Annotations
MapMan:15.6.1.2.3.10EntrezGene:834902ProteinID:AED95674.1ArrayExpress:AT5G48470EnsemblPlantsGene:AT5G48470RefSeq:AT5G48470
TAIR:AT5G48470RefSeq:AT5G48470-TAIR-GEnsemblPlants:AT5G48470.1TAIR:AT5G48470.1EMBL:AY086465Unigene:At.29846
ProteinID:BAA96967.1EMBL:BT025515GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006139GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009507GO:GO:0009536GO:GO:0009658GO:GO:0009987
GO:GO:0016043GO:GO:0042644RefSeq:NP_568697.1PO:PO:0000013PO:PO:0000037PO:PO:0000230
PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025281InterPro:PRDA1PANTHER:PTHR37262UniProt:Q1H5E9
UniParc:UPI0000162842:::::
Description
PRDA1Protein PEP-RELATED DEVELOPMENT ARRESTED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q1H5E9]
Coordinates
chr5:+:19641744..19644362
Molecular Weight (calculated)
44016.0 Da
IEP (calculated)
5.981
GRAVY (calculated)
-0.433
Length
397 amino acids
Sequence
(BLAST)
001: MLQSIHLRFS STPSPSKRES LIIPSVICSF PFTSSSFRPK QTQKLKRLVQ FCAPYEVGGG YTDEELFERY GTQQNQTNVK DKLDPAEYEA LLKGGEQVTS
101: VLEEMITLLE DMKMNEASEN VAVELAAQGV IGKRVDEMES GFMMALDYMI QLADKDQDEK RKSLLEVVKE TVLSHLTKKC PPHVQVIGLL CRTPKKESRH
201: ELLRRVAAGG GAFESENGTK LHIPGANLND IANQADDLLE TMETRPAIPD RKLLARLVLI REEARNMMGG GILDERNDRG FTTLPESEVN FLAKLVALKP
301: GKTVQQMIQN VMQGKDEGAD NLSKEDDSST EGRKPSGLNG RGSVTGRKPL PVRPGMFLET VTKVLGSIYS GNASGITAQH LEWVHQKTLQ VLEEIAY
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.