Factsheet for GSMUA_Achr8P28390_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...	plastid
GSMUA_Achr1P22740_001
GSMUA_Achr3P21650_001	plastid
GSMUA_Achr4P17470_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48470.1	GSMUA_Achr3P21650_001	AT4G28590.1	24132784
AT5G48470.1	GSMUA_Achr1P22740_001	AT5G35750.1	18642946
AT5G48470.1	GSMUA_Achr4P17470_001	AT5G35750.1	18642946
AT5G48470.1	GSMUA_AchrUn_...	AT5G35750.1	18642946
AT5G48470.1	GSMUA_Achr11P...	AT5G51100.1	24132784

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0333g00020.t01	Wine grape	cytosol	65.41	77.22
Zm00001d049152_P001	Maize	plastid	62.41	66.4
OQU90746	Sorghum	plastid	62.16	66.31
Os11t0425300-01	Rice	plastid	63.41	66.23
TraesCS5B01G069000.2	Wheat	plastid	62.66	65.96
TraesCS5D01G074600.1	Wheat	plastid	62.16	65.44
Solyc09g056160.2.1	Tomato	extracellular	63.16	64.12
AT5G48470.1	Thale cress	plastid	63.66	63.98
Bra037485.1-P	Field mustard	cytosol	31.33	63.78
PGSC0003DMT400036221	Potato	endoplasmic reticulum, golgi	62.66	63.61
CDY00055	Canola	plastid	62.66	63.13
CDY19946	Canola	plastid	62.41	62.88
Bra036169.1-P	Field mustard	plastid	62.41	62.88
TraesCS5A01G063400.3	Wheat	plastid	59.65	61.98
KRH66196	Soybean	endoplasmic reticulum, plastid	59.15	60.51
KRH07361	Soybean	plastid	58.15	60.1
CDX85338	Canola	plastid	43.86	54.52

Protein Annotations

EnsemblPlants:GSMUA_Achr8P28390_001	EnsemblPlants:GSMUA_Achr8T28390_001	EnsemblPlantsGene:GSMUA_Achr8G28390_001	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009536	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0042644	InterPro:PRDA1
PANTHER:PTHR37262	SEG:seg	UniParc:UPI00029535C4	UniProt:M0TUE2	MapMan:15.6.1.2.3.10	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G28390_001]

Coordinates

chr8:-:31230241..31234349

Molecular Weight (calculated)

44213.3 Da

IEP (calculated)

6.795

GRAVY (calculated)

-0.377

Length

399 amino acids

Sequence
(BLAST)

001: MMLRSAIFFL PSPSSSPCFP SLPPKSLIIS PRVLLSLRSF CHQRRWQARK KPPFSLCRST QTDAAFPFPS FQHRQPPEAE DDKWDSSKYE ALLRGGEQVT
101: SVLQDMVNLL ADMDMDEASE RVAVEIAAQG VIGKRVDEME SGFMMAIDYM IQMAEKDNDD QRKSLLEVVK QTVLDHLAKK CPPHVQVIGL LCRTPDKESR
201: HELLRRVAAG GGVFKSEKGL KVHLPGANLN DIANQADDLL ETMESRPSIP DRKLLARLVL IREEARNMMG GGLLDERNDR GLNTLPEAEV NFLSTLVSLR
301: PGSTVQKMIS DVMHGKNEGA DNVGSGDEDP NSEQNTLGGF AGRGSVTGRR PRPVRPGMFL ETVSKVLGGI YSGNVSGITA QHLEWVHQKT LQILQEMAF

Best Arabidopsis Sequence Match ( AT5G48470.1 )
(BLAST)

001: MLQSIHLRFS STPSPSKRES LIIPSVICSF PFTSSSFRPK QTQKLKRLVQ FCAPYEVGGG YTDEELFERY GTQQNQTNVK DKLDPAEYEA LLKGGEQVTS
101: VLEEMITLLE DMKMNEASEN VAVELAAQGV IGKRVDEMES GFMMALDYMI QLADKDQDEK RKSLLEVVKE TVLSHLTKKC PPHVQVIGLL CRTPKKESRH
201: ELLRRVAAGG GAFESENGTK LHIPGANLND IANQADDLLE TMETRPAIPD RKLLARLVLI REEARNMMGG GILDERNDRG FTTLPESEVN FLAKLVALKP
301: GKTVQQMIQN VMQGKDEGAD NLSKEDDSST EGRKPSGLNG RGSVTGRKPL PVRPGMFLET VTKVLGSIYS GNASGITAQH LEWVHQKTLQ VLEEIAY

Arabidopsis Description

PRDA1Protein PEP-RELATED DEVELOPMENT ARRESTED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q1H5E9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.