CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74635
CDY05836	plastid
CDY32644	plastid
CDY38848	plastid
CDY47297
CDY70727	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48470.1	CDX74635	AT5G35750.1	18642946
AT5G48470.1	CDY47297	AT5G35750.1	18642946
AT5G48470.1	CDY05836	AT5G51100.1	24132784
AT5G48470.1	CDY32644	AT5G51100.1	24132784
AT5G48470.1	CDY38848	AT5G51100.1	24132784
AT5G48470.1	CDY70727	AT5G51100.1	24132784

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19946	Canola	plastid	98.23	98.23
AT5G48470.1	Thale cress	plastid	85.1	84.89
VIT_00s0333g00020.t01	Wine grape	cytosol	66.67	78.11
CDX85338	Canola	plastid	54.29	66.98
KRH66196	Soybean	endoplasmic reticulum, plastid	65.15	66.15
KRH07361	Soybean	plastid	64.39	66.06
PGSC0003DMT400036221	Potato	endoplasmic reticulum, golgi	65.4	65.9
Solyc09g056160.2.1	Tomato	extracellular	65.15	65.65
GSMUA_Achr8P28390_001	Banana	plastid	63.13	62.66
OQU90746	Sorghum	plastid	58.08	61.5
Zm00001d049152_P001	Maize	plastid	58.08	61.33
TraesCS5D01G074600.1	Wheat	plastid	58.33	60.95
Os11t0425300-01	Rice	plastid	58.33	60.47
TraesCS5B01G069000.2	Wheat	plastid	57.83	60.42
TraesCS5A01G063400.3	Wheat	plastid	57.07	58.85

Protein Annotations

EnsemblPlants:CDY00055	EnsemblPlantsGene:GSBRNA2T00109544001	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009536
GO:GO:0009987	GO:GO:0042644	InterPro:PRDA1	PANTHER:PTHR37262	ProteinID:CDY00055	ProteinID:CDY00055.1
SEG:seg	UniParc:UPI0004EED56E	MapMan:15.6.1.2.3.10	:	:	:

Description

BnaC09g02460D

Coordinates

chrLK031916:-:494571..496973

Molecular Weight (calculated)

43983.7 Da

IEP (calculated)

5.726

GRAVY (calculated)

-0.508

Length

396 amino acids

Sequence
(BLAST)

001: MLQSLHLRFH SSPSPSRRES LIPSITSSSP FSFCSFRPNQ TQKPKRLVQF CAPYEVGGGY TDEELFERYG THQSKTNVED KPDASEYEAL LKGGEQVTSV
101: LEEMITLLQD MKMNEASENV AVELAAQGVI GKRVDEMESG FMMALDYMIQ LADKDQDDKR KSLLEVVKET VLSHLTKKCP PHVQVIGLLC RTPKKESRQE
201: LLRRVAAGGG AFEGKDGTKL HLPGANLNDI ANQADDLLET METRPVVPDR KLLARLVLIR EEARNMMGGG ILDERNDRGF STLPESEVNF LTKLVALKPG
301: KTVQQMIKNV MQGKDEGADD LSNEEDDSTQ GRRQSGLNGR GSFTGKKPLP VRPGMFLETV TKVMGSIYSG NASGITAQHL EWVHEKTLQV LEEIAY

Best Arabidopsis Sequence Match ( AT5G48470.1 )
(BLAST)

001: MLQSIHLRFS STPSPSKRES LIIPSVICSF PFTSSSFRPK QTQKLKRLVQ FCAPYEVGGG YTDEELFERY GTQQNQTNVK DKLDPAEYEA LLKGGEQVTS
101: VLEEMITLLE DMKMNEASEN VAVELAAQGV IGKRVDEMES GFMMALDYMI QLADKDQDEK RKSLLEVVKE TVLSHLTKKC PPHVQVIGLL CRTPKKESRH
201: ELLRRVAAGG GAFESENGTK LHIPGANLND IANQADDLLE TMETRPAIPD RKLLARLVLI REEARNMMGG GILDERNDRG FTTLPESEVN FLAKLVALKP
301: GKTVQQMIQN VMQGKDEGAD NLSKEDDSST EGRKPSGLNG RGSVTGRKPL PVRPGMFLET VTKVLGSIYS GNASGITAQH LEWVHQKTLQ VLEEIAY

Arabidopsis Description

PRDA1Protein PEP-RELATED DEVELOPMENT ARRESTED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q1H5E9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.