CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

plastid 5
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92190	plastid
KRH14106
KRH33343	plastid
KRH34597	plastid
KRH42851	plastid
KRH58946	plastid
KRH70390	plastid
KRH74010

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48470.1	KRH42851	AT4G28590.1	24132784
AT5G48470.1	KRH58946	AT4G28590.1	24132784
AT5G48470.1	KRH14106	AT5G35750.1	18642946
AT5G48470.1	KRH74010	AT5G35750.1	18642946
AT5G48470.1	KRG92190	AT5G51100.1	24132784
AT5G48470.1	KRH33343	AT5G51100.1	24132784
AT5G48470.1	KRH34597	AT5G51100.1	24132784
AT5G48470.1	KRH70390	AT5G51100.1	24132784

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07361	Soybean	plastid	83.33	84.2
VIT_00s0333g00020.t01	Wine grape	cytosol	64.62	74.56
AT5G48470.1	Thale cress	plastid	67.95	66.75
Bra036169.1-P	Field mustard	plastid	66.41	65.4
CDY19946	Canola	plastid	66.41	65.4
CDY00055	Canola	plastid	66.15	65.15
Bra037485.1-P	Field mustard	cytosol	32.56	64.8
Solyc09g056160.2.1	Tomato	extracellular	63.85	63.36
PGSC0003DMT400036221	Potato	endoplasmic reticulum, golgi	62.56	62.09
Zm00001d049152_P001	Maize	plastid	58.46	60.8
OQU90746	Sorghum	plastid	58.21	60.7
TraesCS5D01G074600.1	Wheat	plastid	58.21	59.89
Os11t0425300-01	Rice	plastid	58.46	59.69
TraesCS5B01G069000.2	Wheat	plastid	57.69	59.37
GSMUA_Achr8P28390_001	Banana	plastid	60.51	59.15
TraesCS5A01G063400.3	Wheat	plastid	56.41	57.29
CDX85338	Canola	plastid	45.64	55.45

Protein Annotations

EntrezGene:100799171	MapMan:15.6.1.2.3.10	EMBL:ACUP02001921	ncoils:Coil	EnsemblPlantsGene:GLYMA_03G089700	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009536	GO:GO:0009987	GO:GO:0042644	UniProt:I1JM96
EnsemblPlants:KRH66196	ProteinID:KRH66196	ProteinID:KRH66196.1	InterPro:PRDA1	PANTHER:PTHR37262	UniParc:UPI0002336D72
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:26680307..26686194

Molecular Weight (calculated)

43527.3 Da

IEP (calculated)

5.213

GRAVY (calculated)

-0.368

Length

390 amino acids

Sequence
(BLAST)

001: MFVTSLACSY FTYPTLLHSF CSTFTSSYHQ CTLLQLNRNR KKYCIWASIN GNSAYEVGGG YPELEQNQNG KLHSDMSSQR EALLRGGDQV ISVLEEIITL
101: LEDMNMDEES EKVAVELAAQ GVIGKRVDEM ESDFMMALDY MIQLAENDQD DKRKSLLEVI KETVLSHLTK KCPPHVQVIG LLCRTPKKES RHELLRRVAA
201: GGGVFKGENE LKMHIPAANL NDIANQADDL LEAMETRPVI PDRKLLARLV LIREEARNMM GGGITDERNH RGFYTLPQPE VDFLAKLVAL KPGKNVLDMI
301: RNVMQGKDEG ADKSGNNDED DTTNGDPAEF LGRPLVTGEK TLPVRPGMFL ETVSKVLSGL YAGTDSGITA QHLEWVHRKT LQVLQEIAYG

Best Arabidopsis Sequence Match ( AT5G48470.1 )
(BLAST)

001: MLQSIHLRFS STPSPSKRES LIIPSVICSF PFTSSSFRPK QTQKLKRLVQ FCAPYEVGGG YTDEELFERY GTQQNQTNVK DKLDPAEYEA LLKGGEQVTS
101: VLEEMITLLE DMKMNEASEN VAVELAAQGV IGKRVDEMES GFMMALDYMI QLADKDQDEK RKSLLEVVKE TVLSHLTKKC PPHVQVIGLL CRTPKKESRH
201: ELLRRVAAGG GAFESENGTK LHIPGANLND IANQADDLLE TMETRPAIPD RKLLARLVLI REEARNMMGG GILDERNDRG FTTLPESEVN FLAKLVALKP
301: GKTVQQMIQN VMQGKDEGAD NLSKEDDSST EGRKPSGLNG RGSVTGRKPL PVRPGMFLET VTKVLGSIYS GNASGITAQH LEWVHQKTLQ VLEEIAY

Arabidopsis Description

PRDA1Protein PEP-RELATED DEVELOPMENT ARRESTED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q1H5E9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.