Factsheet for Bra037485.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010359.1-P	plastid
Bra029190.1-P	plastid
Bra035381.1-P
Bra035724.1-P	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48470.1	Bra010359.1-P	AT4G28590.1	24132784
AT5G48470.1	Bra035381.1-P	AT5G35750.1	18642946
AT5G48470.1	Bra029190.1-P	AT5G51100.1	24132784
AT5G48470.1	Bra035724.1-P	AT5G51100.1	24132784

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036169.1-P	Field mustard	plastid	84.69	41.92
VIT_00s0333g00020.t01	Wine grape	cytosol	71.94	41.72
AT5G48470.1	Thale cress	plastid	80.61	39.8
CDX85338	Canola	plastid	64.29	39.25
PGSC0003DMT400036221	Potato	endoplasmic reticulum, golgi	66.33	33.08
OQU90746	Sorghum	plastid	62.76	32.89
Solyc09g056160.2.1	Tomato	extracellular	65.82	32.82
Os11t0425300-01	Rice	plastid	63.78	32.72
TraesCS5D01G074600.1	Wheat	plastid	63.27	32.72
KRH66196	Soybean	endoplasmic reticulum, plastid	64.8	32.56
TraesCS5B01G069000.2	Wheat	plastid	62.76	32.45
KRH07361	Soybean	plastid	63.78	32.38
Zm00001d049152_P001	Maize	plastid	61.73	32.27
TraesCS5A01G063400.3	Wheat	plastid	62.76	32.03
GSMUA_Achr8P28390_001	Banana	plastid	63.78	31.33

Protein Annotations

EnsemblPlants:Bra037485.1	EnsemblPlants:Bra037485.1-P	EnsemblPlantsGene:Bra037485	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009536	GO:GO:0009987	GO:GO:0042644	InterPro:PRDA1	PANTHER:PTHR37262	UniParc:UPI000253F924
UniProt:M4F8S3	MapMan:15.6.1.2.3.10	:	:	:	:

Description

AT5G48470 (E=3e-075) | unknown protein

Coordinates

chrA06:+:21230108..21231046

Molecular Weight (calculated)

21549.0 Da

IEP (calculated)

9.847

GRAVY (calculated)

-0.566

Length

196 amino acids

Sequence
(BLAST)

001: MMALDYMIQL ADKNQDDKVN QERQELLRRV AAGGGAFESK DGNKLHLPGG NLNDIANQAG DLLETMETRP VVPDRILLAR LVSRNMMGGG ILDERNDRGF
101: STLPESEVNF LTKLVALKPG KSVQQMTQNV MQGKDEGADD LSNREDSSTQ GRRQSGLNGR GSVTGRKPLP VRPGMFLETV TKVYFKIASS KKMIVT

Best Arabidopsis Sequence Match ( AT5G48470.1 )
(BLAST)

001: MLQSIHLRFS STPSPSKRES LIIPSVICSF PFTSSSFRPK QTQKLKRLVQ FCAPYEVGGG YTDEELFERY GTQQNQTNVK DKLDPAEYEA LLKGGEQVTS
101: VLEEMITLLE DMKMNEASEN VAVELAAQGV IGKRVDEMES GFMMALDYMI QLADKDQDEK RKSLLEVVKE TVLSHLTKKC PPHVQVIGLL CRTPKKESRH
201: ELLRRVAAGG GAFESENGTK LHIPGANLND IANQADDLLE TMETRPAIPD RKLLARLVLI REEARNMMGG GILDERNDRG FTTLPESEVN FLAKLVALKP
301: GKTVQQMIQN VMQGKDEGAD NLSKEDDSST EGRKPSGLNG RGSVTGRKPL PVRPGMFLET VTKVLGSIYS GNASGITAQH LEWVHQKTLQ VLEEIAY

Arabidopsis Description

PRDA1Protein PEP-RELATED DEVELOPMENT ARRESTED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q1H5E9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.