Factsheet for VIT_00s0333g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0005g03800.t01	plastid
VIT_12s0057g00690.t01
VIT_16s0013g00260.t01	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48470.1	VIT_07s0005g03800.t01	AT4G28590.1	24132784
AT5G48470.1	VIT_12s0057g00690.t01	AT5G35750.1	18642946
AT5G48470.1	VIT_16s0013g00260.t01	AT5G51100.1	24132784

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037485.1-P	Field mustard	cytosol	41.72	71.94
PGSC0003DMT400036221	Potato	endoplasmic reticulum, golgi	80.18	68.96
Solyc09g056160.2.1	Tomato	extracellular	79.88	68.7
AT5G48470.1	Thale cress	plastid	79.29	67.51
Bra036169.1-P	Field mustard	plastid	78.11	66.67
CDY00055	Canola	plastid	78.11	66.67
CDY19946	Canola	plastid	78.11	66.67
GSMUA_Achr8P28390_001	Banana	plastid	77.22	65.41
KRH66196	Soybean	endoplasmic reticulum, plastid	74.56	64.62
KRH07361	Soybean	plastid	73.67	64.51
OQU90746	Sorghum	plastid	70.12	63.37
Zm00001d049152_P001	Maize	plastid	69.82	62.93
TraesCS5B01G069000.2	Wheat	plastid	70.12	62.53
Os11t0425300-01	Rice	plastid	70.41	62.3
TraesCS5D01G074600.1	Wheat	plastid	69.82	62.27
TraesCS5A01G063400.3	Wheat	plastid	67.46	59.38
CDX85338	Canola	plastid	55.33	58.26

Protein Annotations

EntrezGene:100265443	wikigene:100265443	MapMan:15.6.1.2.3.10	ProteinID:CBI38313	ProteinID:CBI38313.3	UniProt:D7U6E4
EMBL:FN596522	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009536	GO:GO:0009987
GO:GO:0042644	EntrezGene:LOC100265443	wikigene:LOC100265443	InterPro:PRDA1	PANTHER:PTHR37262	TIGR:TC59414
UniParc:UPI0001BE5078	ArrayExpress:VIT_00s0333g00020	EnsemblPlantsGene:VIT_00s0333g00020	EnsemblPlants:VIT_00s0333g00020.t01	unigene:Vvi.14568	RefSeq:XP_002263438
RefSeq:XP_002263438.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:23770945..23778378

Molecular Weight (calculated)

36946.3 Da

IEP (calculated)

4.815

GRAVY (calculated)

-0.409

Length

338 amino acids

Sequence
(BLAST)

001: MCGIYQVGGT SQSTQQEQRG DDENTSHYEA LLKGGEQVTS VLQEMVNLLE DMNMDEASEE VAVELAAQGV IGKRVDQMES GFMMALDYMI QLAEKDQDDK
101: RKSLLEVIKE TVLSHLTKKC PPHVQVIGLL CRTPQKESRH ELLRRVAAGG GVFQSENGTK VQLPGANLND IANQADDLLE TMETRPVVPD RKLLARLVLI
201: REEARNMMGG GILDERNDRG LNTLPESEVN FLTKLVALKP GETVQEMIKN VMQGKDEGAD NSEGDKGDSS SGKFSGGIAG RSSVTGRKPL PVRPGMFLET
301: VSKVLGGIYG GNISGITAQH LEWVHQKTLQ ILQEIAFS

Best Arabidopsis Sequence Match ( AT5G48470.1 )
(BLAST)

001: MLQSIHLRFS STPSPSKRES LIIPSVICSF PFTSSSFRPK QTQKLKRLVQ FCAPYEVGGG YTDEELFERY GTQQNQTNVK DKLDPAEYEA LLKGGEQVTS
101: VLEEMITLLE DMKMNEASEN VAVELAAQGV IGKRVDEMES GFMMALDYMI QLADKDQDEK RKSLLEVVKE TVLSHLTKKC PPHVQVIGLL CRTPKKESRH
201: ELLRRVAAGG GAFESENGTK LHIPGANLND IANQADDLLE TMETRPAIPD RKLLARLVLI REEARNMMGG GILDERNDRG FTTLPESEVN FLAKLVALKP
301: GKTVQQMIQN VMQGKDEGAD NLSKEDDSST EGRKPSGLNG RGSVTGRKPL PVRPGMFLET VTKVLGSIYS GNASGITAQH LEWVHQKTLQ VLEEIAY

Arabidopsis Description

PRDA1Protein PEP-RELATED DEVELOPMENT ARRESTED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q1H5E9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.