CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92190	plastid
KRH14106
KRH33343	plastid
KRH34597	plastid
KRH42851	plastid
KRH58946	plastid
KRH70390	plastid
KRH74010

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48470.1	KRH42851	AT4G28590.1	24132784
AT5G48470.1	KRH58946	AT4G28590.1	24132784
AT5G48470.1	KRH14106	AT5G35750.1	18642946
AT5G48470.1	KRH74010	AT5G35750.1	18642946
AT5G48470.1	KRG92190	AT5G51100.1	24132784
AT5G48470.1	KRH33343	AT5G51100.1	24132784
AT5G48470.1	KRH34597	AT5G51100.1	24132784
AT5G48470.1	KRH70390	AT5G51100.1	24132784

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66196	Soybean	endoplasmic reticulum, plastid	84.2	83.33
VIT_00s0333g00020.t01	Wine grape	cytosol	64.51	73.67
AT5G48470.1	Thale cress	plastid	67.62	65.74
Bra036169.1-P	Field mustard	plastid	66.32	64.65
CDY19946	Canola	plastid	66.32	64.65
CDY00055	Canola	plastid	66.06	64.39
Bra037485.1-P	Field mustard	cytosol	32.38	63.78
Solyc09g056160.2.1	Tomato	extracellular	63.73	62.6
PGSC0003DMT400036221	Potato	endoplasmic reticulum, golgi	62.95	61.83
OQU90746	Sorghum	plastid	58.29	60.16
Zm00001d049152_P001	Maize	plastid	57.51	59.2
Os11t0425300-01	Rice	plastid	58.29	58.9
TraesCS5D01G074600.1	Wheat	plastid	57.51	58.58
GSMUA_Achr8P28390_001	Banana	plastid	60.1	58.15
TraesCS5B01G069000.2	Wheat	plastid	56.99	58.05
TraesCS5A01G063400.3	Wheat	plastid	55.7	55.99
CDX85338	Canola	plastid	45.6	54.83

Protein Annotations

EMBL:ACUP02009973	EnsemblPlants:KRH07361	EnsemblPlantsGene:GLYMA_16G083300	EntrezGene:100795042	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009536	GO:GO:0009987	GO:GO:0042644	InterPro:PRDA1	PANTHER:PTHR37262
ProteinID:KRH07361	ProteinID:KRH07361.1	UniParc:UPI000233B051	UniProt:I1MM59	MapMan:15.6.1.2.3.10	:

Description

hypothetical protein

Coordinates

chr16:+:9471455..9476646

Molecular Weight (calculated)

42914.7 Da

IEP (calculated)

5.030

GRAVY (calculated)

-0.365

Length

386 amino acids

Sequence
(BLAST)

001: MFVASLACSC TYPSLLLRSL CPTFTSWSYQ LKQLNRKKNR ILASINGNSA YDVGGGYPEL EQNQNGKLHS DMSSQREALL KGGDQVISVL EEMITLLEDM
101: NMDEESEKVA VELAAQGVIG KRVDEMESDF MMALDYMIQL AENDQDDKRK SLLEVIKETV LSHLTKKCPP QVQVIGLLCR TPKKESRHEL LRRVAAGGGV
201: FKGENELKIH IPSANLNDIA NQADDLLEAM ETRPVIPDRK LLARLVLIRE EARDMMGGGI MDERNHRGFY TLPQPEVDFL AKLVALKPGK NVLDMIRNVM
301: QGKDEGADKS GNDNEDDTTN GEPAEFLGRP LVTGEKTLPV RPGMFLETVS KVLSGLYAGT DSGITAQHLE WVHRKTLQVL QEIAYG

Best Arabidopsis Sequence Match ( AT5G48470.1 )
(BLAST)

001: MLQSIHLRFS STPSPSKRES LIIPSVICSF PFTSSSFRPK QTQKLKRLVQ FCAPYEVGGG YTDEELFERY GTQQNQTNVK DKLDPAEYEA LLKGGEQVTS
101: VLEEMITLLE DMKMNEASEN VAVELAAQGV IGKRVDEMES GFMMALDYMI QLADKDQDEK RKSLLEVVKE TVLSHLTKKC PPHVQVIGLL CRTPKKESRH
201: ELLRRVAAGG GAFESENGTK LHIPGANLND IANQADDLLE TMETRPAIPD RKLLARLVLI REEARNMMGG GILDERNDRG FTTLPESEVN FLAKLVALKP
301: GKTVQQMIQN VMQGKDEGAD NLSKEDDSST EGRKPSGLNG RGSVTGRKPL PVRPGMFLET VTKVLGSIYS GNASGITAQH LEWVHQKTLQ VLEEIAY

Arabidopsis Description

PRDA1Protein PEP-RELATED DEVELOPMENT ARRESTED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q1H5E9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.