Factsheet for Solyc09g056160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	cytosol, mitochondrion, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g079730.2.1	plastid
Solyc03g095180.2.1	plastid
Solyc06g048410.2.1	plastid
Solyc06g048420.1.1	plastid
Solyc07g047770.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48470.1	Solyc02g079730.2.1	AT4G28590.1	24132784
AT5G48470.1	Solyc07g047770.2.1	AT5G35750.1	18642946
AT5G48470.1	Solyc03g095180.2.1	AT5G51100.1	24132784
AT5G48470.1	Solyc06g048410.2.1	AT5G51100.1	24132784
AT5G48470.1	Solyc06g048420.1.1	AT5G51100.1	24132784

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036221	Potato	endoplasmic reticulum, golgi	89.82	89.82
VIT_00s0333g00020.t01	Wine grape	cytosol	68.7	79.88
Bra037485.1-P	Field mustard	cytosol	32.82	65.82
AT5G48470.1	Thale cress	plastid	66.41	65.74
Bra036169.1-P	Field mustard	plastid	66.16	65.66
CDY19946	Canola	plastid	66.16	65.66
CDY00055	Canola	plastid	65.65	65.15
KRH66196	Soybean	endoplasmic reticulum, plastid	63.36	63.85
KRH07361	Soybean	plastid	62.6	63.73
GSMUA_Achr8P28390_001	Banana	plastid	64.12	63.16
OQU90746	Sorghum	plastid	58.78	61.76
Zm00001d049152_P001	Maize	plastid	58.52	61.33
Os11t0425300-01	Rice	plastid	59.03	60.73
TraesCS5D01G074600.1	Wheat	plastid	58.02	60.16
TraesCS5B01G069000.2	Wheat	plastid	57.51	59.63
TraesCS5A01G063400.3	Wheat	plastid	55.47	56.77
CDX85338	Canola	plastid	45.29	55.45

Protein Annotations

EnsemblPlants:Solyc09g056160.2.1	EnsemblPlantsGene:Solyc09g056160.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009536
GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0042644	InterPro:PRDA1	PANTHER:PTHR37262
UniParc:UPI000276B16F	UniProt:K4CTB1	MapMan:15.6.1.2.3.10	:	:	:

Description

No Description!

Coordinates

chr9:+:47173240..47178328

Molecular Weight (calculated)

42857.4 Da

IEP (calculated)

4.917

GRAVY (calculated)

-0.225

Length

393 amino acids

Sequence
(BLAST)

001: MAFLSIPIVF CGATPASLSR YSTPSLYYFL QPEIPNQYSL QLKTSCRLNL SALCTSNEVG AGSLAEEFGA QNGRMENHGH EVGDFDTSQY QVLLKGGEQV
101: TSVLEEMAKL LEDMKMDEAS EEVAVQLAAQ GVIGKRVDEM ESGFMMALDY MIQTADNDQD DKRKSLLEVI KETVLSHLTK KCPPHVQVIG LLCRTPQKES
201: RHELLRRVAA GGGVFQSENG TKVHLPGANL NDIANQADDI LETMESRSVI PDRKLLARLV LIREEARNMM GGGILDERND RGLNILPESE VNFLTELVSL
301: RPGKAVRDMI KNVMLGKEEG ADSSNDEVGA AGGIAGRASV SGRKPSPVRP GMFLETVSKV LGGIYGGNVS GVTAQHLEWV HQNTLQILQE IAF

Best Arabidopsis Sequence Match ( AT5G48470.1 )
(BLAST)

001: MLQSIHLRFS STPSPSKRES LIIPSVICSF PFTSSSFRPK QTQKLKRLVQ FCAPYEVGGG YTDEELFERY GTQQNQTNVK DKLDPAEYEA LLKGGEQVTS
101: VLEEMITLLE DMKMNEASEN VAVELAAQGV IGKRVDEMES GFMMALDYMI QLADKDQDEK RKSLLEVVKE TVLSHLTKKC PPHVQVIGLL CRTPKKESRH
201: ELLRRVAAGG GAFESENGTK LHIPGANLND IANQADDLLE TMETRPAIPD RKLLARLVLI REEARNMMGG GILDERNDRG FTTLPESEVN FLAKLVALKP
301: GKTVQQMIQN VMQGKDEGAD NLSKEDDSST EGRKPSGLNG RGSVTGRKPL PVRPGMFLET VTKVLGSIYS GNASGITAQH LEWVHQKTLQ VLEEIAY

Arabidopsis Description

PRDA1Protein PEP-RELATED DEVELOPMENT ARRESTED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q1H5E9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.