Factsheet for Zm00001d049152_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014297_P006
Zm00001d038235_P001	plastid
Zm00001d043009_P002	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48470.1	Zm00001d043009_P002	AT4G28590.1	24132784
AT5G48470.1	Zm00001d014297_P006	AT5G35750.1	18642946
AT5G48470.1	Zm00001d038235_P001	AT5G51100.1	24132784

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU90746	Sorghum	plastid	93.07	93.32
Os11t0425300-01	Rice	plastid	83.73	82.2
TraesCS5D01G074600.1	Wheat	plastid	80.27	79.42
TraesCS5B01G069000.2	Wheat	plastid	80.0	79.16
TraesCS5A01G063400.3	Wheat	plastid	77.07	75.26
VIT_00s0333g00020.t01	Wine grape	cytosol	62.93	69.82
GSMUA_Achr8P28390_001	Banana	plastid	66.4	62.41
Bra037485.1-P	Field mustard	cytosol	32.27	61.73
AT5G48470.1	Thale cress	plastid	63.73	60.2
PGSC0003DMT400036221	Potato	endoplasmic reticulum, golgi	61.87	59.03
Solyc09g056160.2.1	Tomato	extracellular	61.33	58.52
KRH66196	Soybean	endoplasmic reticulum, plastid	60.8	58.46
CDY00055	Canola	plastid	61.33	58.08
CDY19946	Canola	plastid	61.07	57.83
Bra036169.1-P	Field mustard	plastid	61.07	57.83
KRH07361	Soybean	plastid	59.2	57.51
CDX85338	Canola	plastid	42.93	50.16

Protein Annotations

MapMan:15.6.1.2.3.10	ProteinID:AQK49697.1	EMBL:BT067810	UniProt:C0PHP1	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009536	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0042644
InterPro:PRDA1	PANTHER:PTHR37262	UniParc:UPI000195CE66	EnsemblPlantsGene:Zm00001d049152	EnsemblPlants:Zm00001d049152_P001	EnsemblPlants:Zm00001d049152_T001

Description

pep-related development arrested1 homolog pep-related development arrested1 homolog

Coordinates

chr4:-:17892779..17899598

Molecular Weight (calculated)

40854.4 Da

IEP (calculated)

5.486

GRAVY (calculated)

-0.206

Length

375 amino acids

Sequence
(BLAST)

001: MFLSLAQSPA CAVVSFPWRS SSQLIPRVPS RCTLACHAAV PKVPLPIASP ASLGDDPSKW DPAECDALLR GGEQVASVLQ EMVTLMEDME MDGAFEQVAV
101: ELVAQGVIGK RVDEMESGFL MALDYMIQLA QKDTDDERKS ILEVIKQTVL DHLTKKCPPH VQVVGLLCQT EKKESRHELL RRVAAGGGVF KNDKGLKCQI
201: PGANLNDIAN QADDLVESME SRDTIPDRKL LARLVIVREE ARNMMGGGLL DERNDRGLTT LPEAEVNFLS KLVALKPGKA LERMIKNVMN GRGEGADNVE
301: QPSADSHSEQ ESLTGVLGRG SVSGHKPRPV RPGMFLETVS KVLGGVYASN TSGITAQHLE WVHQTTLKIL QEMAF

Best Arabidopsis Sequence Match ( AT5G48470.1 )
(BLAST)

001: MLQSIHLRFS STPSPSKRES LIIPSVICSF PFTSSSFRPK QTQKLKRLVQ FCAPYEVGGG YTDEELFERY GTQQNQTNVK DKLDPAEYEA LLKGGEQVTS
101: VLEEMITLLE DMKMNEASEN VAVELAAQGV IGKRVDEMES GFMMALDYMI QLADKDQDEK RKSLLEVVKE TVLSHLTKKC PPHVQVIGLL CRTPKKESRH
201: ELLRRVAAGG GAFESENGTK LHIPGANLND IANQADDLLE TMETRPAIPD RKLLARLVLI REEARNMMGG GILDERNDRG FTTLPESEVN FLAKLVALKP
301: GKTVQQMIQN VMQGKDEGAD NLSKEDDSST EGRKPSGLNG RGSVTGRKPL PVRPGMFLET VTKVLGSIYS GNASGITAQH LEWVHQKTLQ VLEEIAY

Arabidopsis Description

PRDA1Protein PEP-RELATED DEVELOPMENT ARRESTED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q1H5E9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.