CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01697	plastid
KXG19156	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48470.1	EES01697	AT4G28590.1	24132784
AT5G48470.1	KXG19156	AT5G51100.1	24132784

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049152_P001	Maize	plastid	93.32	93.07
Os11t0425300-01	Rice	plastid	85.83	84.03
TraesCS5D01G074600.1	Wheat	plastid	82.62	81.53
TraesCS5B01G069000.2	Wheat	plastid	82.09	81.0
TraesCS5A01G063400.3	Wheat	plastid	79.41	77.34
VIT_00s0333g00020.t01	Wine grape	cytosol	63.37	70.12
Bra037485.1-P	Field mustard	cytosol	32.89	62.76
GSMUA_Achr8P28390_001	Banana	plastid	66.31	62.16
AT5G48470.1	Thale cress	plastid	63.37	59.7
PGSC0003DMT400036221	Potato	endoplasmic reticulum, golgi	62.57	59.54
Solyc09g056160.2.1	Tomato	extracellular	61.76	58.78
KRH07361	Soybean	plastid	60.16	58.29
KRH66196	Soybean	endoplasmic reticulum, plastid	60.7	58.21
CDY00055	Canola	plastid	61.5	58.08
CDY19946	Canola	plastid	60.96	57.58
Bra036169.1-P	Field mustard	plastid	60.96	57.58
CDX85338	Canola	plastid	43.85	51.09

Protein Annotations

MapMan:15.6.1.2.3.10	EntrezGene:8057060	UniProt:A0A1Z5S4Q2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009536	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0042644	ProteinID:OQU90744.1
ProteinID:OQU90745.1	EnsemblPlants:OQU90746	ProteinID:OQU90746	ProteinID:OQU90746.1	InterPro:PRDA1	PANTHER:PTHR37262
EnsemblPlantsGene:SORBI_3001G037500	SignalP:SignalP-noTM	UniParc:UPI0001A81FA2	RefSeq:XP_002463643.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:2794698..2803370

Molecular Weight (calculated)

40694.4 Da

IEP (calculated)

5.491

GRAVY (calculated)

-0.175

Length

374 amino acids

Sequence
(BLAST)

001: MFLSLDLSLA CAVVAFPWRP SSQLISRVPS RCNLTCHAAA PKVPLPIASP ASLGDDPSKW DPAECDALLR GGEQVASVLQ EMLTLMEDME MDGAFEPVAV
101: ELVAQGVIGK RVDEMESGFL MALDYMIQLA QKDADDERKS LLEVIKQTVL DHLTKKCPPH VQVVGLLCQT EKKESRHELL RRVAAGGGVF KNDKGLKCQI
201: PGANLSDIAN QADDLLESME SRDTIPDRKL LARLVIVREE ARNMMGGGLL DERNDRGLST LPEAEVNFLS KLVALKPGKA LERMIKDVMN GKGEGADNIE
301: PSAGSHSEQE RLTGVLGRGS VSGHKPRPVR PGMFLETVSK VLGGVYASNT SGITAQHLEW VHQTTLKILQ EMAF

Best Arabidopsis Sequence Match ( AT5G48470.1 )
(BLAST)

001: MLQSIHLRFS STPSPSKRES LIIPSVICSF PFTSSSFRPK QTQKLKRLVQ FCAPYEVGGG YTDEELFERY GTQQNQTNVK DKLDPAEYEA LLKGGEQVTS
101: VLEEMITLLE DMKMNEASEN VAVELAAQGV IGKRVDEMES GFMMALDYMI QLADKDQDEK RKSLLEVVKE TVLSHLTKKC PPHVQVIGLL CRTPKKESRH
201: ELLRRVAAGG GAFESENGTK LHIPGANLND IANQADDLLE TMETRPAIPD RKLLARLVLI REEARNMMGG GILDERNDRG FTTLPESEVN FLAKLVALKP
301: GKTVQQMIQN VMQGKDEGAD NLSKEDDSST EGRKPSGLNG RGSVTGRKPL PVRPGMFLET VTKVLGSIYS GNASGITAQH LEWVHQKTLQ VLEEIAY

Arabidopsis Description

PRDA1Protein PEP-RELATED DEVELOPMENT ARRESTED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q1H5E9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.