Factsheet for TraesCS5A01G063400.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G349000.1	plastid
TraesCS3B01G381100.1	plastid
TraesCS3D01G342900.1	plastid
TraesCS4A01G434000.1	plastid
TraesCS7A01G048600.1	plastid
TraesCS7D01G043000.1	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48470.1	TraesCS3A01G349000.1	AT4G28590.1	24132784
AT5G48470.1	TraesCS3B01G381100.1	AT4G28590.1	24132784
AT5G48470.1	TraesCS3D01G342900.1	AT4G28590.1	24132784
AT5G48470.1	TraesCS4A01G434000.1	AT5G51100.1	24132784
AT5G48470.1	TraesCS7A01G048600.1	AT5G51100.1	24132784
AT5G48470.1	TraesCS7D01G043000.1	AT5G51100.1	24132784

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G074600.1	Wheat	plastid	94.01	95.25
TraesCS5B01G069000.2	Wheat	plastid	93.49	94.72
OQU90746	Sorghum	plastid	77.34	79.41
Os11t0425300-01	Rice	plastid	77.34	77.75
Zm00001d049152_P001	Maize	plastid	75.26	77.07
VIT_00s0333g00020.t01	Wine grape	cytosol	59.38	67.46
Bra037485.1-P	Field mustard	cytosol	32.03	62.76
GSMUA_Achr8P28390_001	Banana	plastid	61.98	59.65
AT5G48470.1	Thale cress	plastid	60.68	58.69
Bra036169.1-P	Field mustard	plastid	58.85	57.07
CDY19946	Canola	plastid	58.85	57.07
CDY00055	Canola	plastid	58.85	57.07
KRH66196	Soybean	endoplasmic reticulum, plastid	57.29	56.41
PGSC0003DMT400036221	Potato	endoplasmic reticulum, golgi	57.03	55.73
KRH07361	Soybean	plastid	55.99	55.7
Solyc09g056160.2.1	Tomato	extracellular	56.77	55.47
CDX85338	Canola	plastid	42.19	50.47

Protein Annotations

EnsemblPlants:TraesCS5A01G063400.3	EnsemblPlantsGene:TraesCS5A01G063400	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009536
GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0042644	InterPro:PRDA1	PANTHER:PTHR37262
SEG:seg	MapMan:15.6.1.2.3.10	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:68931472..68936864

Molecular Weight (calculated)

41326.9 Da

IEP (calculated)

5.072

GRAVY (calculated)

-0.249

Length

384 amino acids

Sequence
(BLAST)

001: MAALSLSLAP PTAVLPCLPS RPAASLLRPQ VPSRATLVVC LGAKPKVPLP IASPSPLGDD PAKWDPAECD ALLRGGEQVA SVLQEMLTLM EDMEMDGAFA
101: PVAVELVAQG VIGNRVDEME SGFLMALDYM IQLAQKDGDD ERNSLLEIVK QTVLDHLTKK CPPHVQVVGL LCQTEKKESR HELLRRVAAG GGVFENDKGL
201: KCQIPGANLN DIANQADDLL ESMETRPTIP DRKLLARLVI VREEARNMMG GGLLDERNDR GLNTLPQAEV NFLSKLVALK PGKAVEKMIS DVMHGKEEGA
301: DNTESTNTGP NSDLEPSTGT SGRENATGRK PQPVRPGMFL ETVSKVLGGI YAKNTSGITA QHLEWVAMSY LAVKWSGRNG DRST

Best Arabidopsis Sequence Match ( AT5G48470.1 )
(BLAST)

001: MLQSIHLRFS STPSPSKRES LIIPSVICSF PFTSSSFRPK QTQKLKRLVQ FCAPYEVGGG YTDEELFERY GTQQNQTNVK DKLDPAEYEA LLKGGEQVTS
101: VLEEMITLLE DMKMNEASEN VAVELAAQGV IGKRVDEMES GFMMALDYMI QLADKDQDEK RKSLLEVVKE TVLSHLTKKC PPHVQVIGLL CRTPKKESRH
201: ELLRRVAAGG GAFESENGTK LHIPGANLND IANQADDLLE TMETRPAIPD RKLLARLVLI REEARNMMGG GILDERNDRG FTTLPESEVN FLAKLVALKP
301: GKTVQQMIQN VMQGKDEGAD NLSKEDDSST EGRKPSGLNG RGSVTGRKPL PVRPGMFLET VTKVLGSIYS GNASGITAQH LEWVHQKTLQ VLEEIAY

Arabidopsis Description

PRDA1Protein PEP-RELATED DEVELOPMENT ARRESTED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q1H5E9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.