Factsheet for PGSC0003DMT400036221

Subcellular Localization

min:

: max

Winner_takes_all: golgi, endoplasmic reticulum

Predictor Summary:

plastid 4
endoplasmic reticulum 4
extracellular 3
golgi 4
plasma membrane 3
vacuole 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400013447	plastid
PGSC0003DMT400015729
PGSC0003DMT400036037	plastid
PGSC0003DMT400070920	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48470.1	PGSC0003DMT400036037	AT4G28590.1	24132784
AT5G48470.1	PGSC0003DMT400015729	AT5G35750.1	18642946
AT5G48470.1	PGSC0003DMT400013447	AT5G51100.1	24132784
AT5G48470.1	PGSC0003DMT400070920	AT5G51100.1	24132784

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g056160.2.1	Tomato	extracellular	89.82	89.82
VIT_00s0333g00020.t01	Wine grape	cytosol	68.96	80.18
Bra037485.1-P	Field mustard	cytosol	33.08	66.33
AT5G48470.1	Thale cress	plastid	66.41	65.74
Bra036169.1-P	Field mustard	plastid	65.9	65.4
CDY00055	Canola	plastid	65.9	65.4
CDY19946	Canola	plastid	65.9	65.4
KRH07361	Soybean	plastid	61.83	62.95
GSMUA_Achr8P28390_001	Banana	plastid	63.61	62.66
OQU90746	Sorghum	plastid	59.54	62.57
KRH66196	Soybean	endoplasmic reticulum, plastid	62.09	62.56
Zm00001d049152_P001	Maize	plastid	59.03	61.87
Os11t0425300-01	Rice	plastid	59.29	60.99
TraesCS5D01G074600.1	Wheat	plastid	58.27	60.42
TraesCS5B01G069000.2	Wheat	plastid	57.51	59.63
TraesCS5A01G063400.3	Wheat	plastid	55.73	57.03
CDX85338	Canola	plastid	45.04	55.14

Protein Annotations

EntrezGene:102594523	MapMan:15.6.1.2.3.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009536
GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0042644	UniProt:M1B3E4	EnsemblPlantsGene:PGSC0003DMG400013943
PGSC:PGSC0003DMG400013943	EnsemblPlants:PGSC0003DMT400036221	InterPro:PRDA1	PANTHER:PTHR37262	SignalP:SignalP-noTM	UniParc:UPI000296D3E5
RefSeq:XP_006343740.1	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400013943]

Coordinates

chr9:+:23230099..23234968

Molecular Weight (calculated)

42990.8 Da

IEP (calculated)

4.999

GRAVY (calculated)

-0.211

Length

393 amino acids

Sequence
(BLAST)

001: MAFLSIPIIF CGAAPAILSR YSTPSPYYFL QLEIPNQYSL QLKPSSRLNL SALCTSYEVG AGFLAEEFGA QNGRMENSGP EIGDFDTSQY QVLLKGGEQV
101: TSVLEEMAKL LEDMKMDEAS EEVAVQLAAQ GVIGKRVDEM ESGFMMALDY MIQTADKDQD DKRKSLLEVI KETVLSHLTK KCPPHVQVVG LLCRTPQKES
201: RHELLRRVAG GGGVFQSENG TKVHLPGANL NDIANQADDI LETMESRSVI PDRKLLARLV LIREEARNMM GGGILDERND RGLNILPESE VNFLTKLVSL
301: RPGKTVRDMI KNVMLGKEEG ADSSDDEVGA AGGIAGRASV SGRKPHPVRP GMFLETVSKV LGGIYGTNVS GVTAQHLEWV HQNTLQILQE IAF

Best Arabidopsis Sequence Match ( AT5G48470.1 )
(BLAST)

001: MLQSIHLRFS STPSPSKRES LIIPSVICSF PFTSSSFRPK QTQKLKRLVQ FCAPYEVGGG YTDEELFERY GTQQNQTNVK DKLDPAEYEA LLKGGEQVTS
101: VLEEMITLLE DMKMNEASEN VAVELAAQGV IGKRVDEMES GFMMALDYMI QLADKDQDEK RKSLLEVVKE TVLSHLTKKC PPHVQVIGLL CRTPKKESRH
201: ELLRRVAAGG GAFESENGTK LHIPGANLND IANQADDLLE TMETRPAIPD RKLLARLVLI REEARNMMGG GILDERNDRG FTTLPESEVN FLAKLVALKP
301: GKTVQQMIQN VMQGKDEGAD NLSKEDDSST EGRKPSGLNG RGSVTGRKPL PVRPGMFLET VTKVLGSIYS GNASGITAQH LEWVHQKTLQ VLEEIAY

Arabidopsis Description

PRDA1Protein PEP-RELATED DEVELOPMENT ARRESTED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q1H5E9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.