CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74635
CDY05836	plastid
CDY32644	plastid
CDY38848	plastid
CDY47297
CDY70727	plastid

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48470.1	CDX74635	AT5G35750.1	18642946
AT5G48470.1	CDY47297	AT5G35750.1	18642946
AT5G48470.1	CDY05836	AT5G51100.1	24132784
AT5G48470.1	CDY32644	AT5G51100.1	24132784
AT5G48470.1	CDY38848	AT5G51100.1	24132784
AT5G48470.1	CDY70727	AT5G51100.1	24132784

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036169.1-P	Field mustard	plastid	100.0	100.0
CDY00055	Canola	plastid	98.23	98.23
AT5G48470.1	Thale cress	plastid	84.34	84.13
VIT_00s0333g00020.t01	Wine grape	cytosol	66.67	78.11
KRH66196	Soybean	endoplasmic reticulum, plastid	65.4	66.41
KRH07361	Soybean	plastid	64.65	66.32
Solyc09g056160.2.1	Tomato	extracellular	65.66	66.16
CDX85338	Canola	plastid	53.54	66.04
PGSC0003DMT400036221	Potato	endoplasmic reticulum, golgi	65.4	65.9
GSMUA_Achr8P28390_001	Banana	plastid	62.88	62.41
Zm00001d049152_P001	Maize	plastid	57.83	61.07
OQU90746	Sorghum	plastid	57.58	60.96
TraesCS5D01G074600.1	Wheat	plastid	58.33	60.95
TraesCS5B01G069000.2	Wheat	plastid	57.83	60.42
Os11t0425300-01	Rice	plastid	58.08	60.21
TraesCS5A01G063400.3	Wheat	plastid	57.07	58.85

Protein Annotations

EnsemblPlants:CDY19946	EnsemblPlantsGene:GSBRNA2T00009752001	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009536
GO:GO:0009987	GO:GO:0042644	InterPro:PRDA1	PANTHER:PTHR37262	ProteinID:CDY19946	ProteinID:CDY19946.1
SEG:seg	UniParc:UPI0002541EB7	UniProt:A0A078G3L5	MapMan:15.6.1.2.3.10	:	:

Description

BnaA09g03050DBnaA09g03050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G3L5]

Coordinates

chrLK032102:-:72172..74473

Molecular Weight (calculated)

44045.8 Da

IEP (calculated)

5.935

GRAVY (calculated)

-0.513

Length

396 amino acids

Sequence
(BLAST)

001: MLQSLHLRFH SSPSPFRRES LTPSITSSSP FSFCSFRPKQ TQKPNRLVQF CAPYEVGGGY TDEELFERYG THQSKTNVED KPDASEYEAL LKGGEQVTSV
101: LEEMITLLQD MKMNEASENV AVELAAQGVI GKRVDEMESG FMMALDYMIQ LADKDQDDKR KSLLEVVKET VLSHLTKKCP PHVQVIGLLC RTPKKESRQE
201: LLRRVAAGGG AFEGKDGTKL HLPGANLNDI ANQADDLLET METRPVVPDR KLLARLVLIR EEARNMMGGG ILDERNDRGF NTLPESEVNF LTKLVALKPG
301: KTVQQMIKNV MQGKDEGADD LSNEEDDSTQ GRRQSGLKGR GSFTGKKPLP VRPGMFLETV TKVMGSIYSG SASGITAQHL EWVHEKTLQV LEEIAY

Best Arabidopsis Sequence Match ( AT5G48470.1 )
(BLAST)

001: MLQSIHLRFS STPSPSKRES LIIPSVICSF PFTSSSFRPK QTQKLKRLVQ FCAPYEVGGG YTDEELFERY GTQQNQTNVK DKLDPAEYEA LLKGGEQVTS
101: VLEEMITLLE DMKMNEASEN VAVELAAQGV IGKRVDEMES GFMMALDYMI QLADKDQDEK RKSLLEVVKE TVLSHLTKKC PPHVQVIGLL CRTPKKESRH
201: ELLRRVAAGG GAFESENGTK LHIPGANLND IANQADDLLE TMETRPAIPD RKLLARLVLI REEARNMMGG GILDERNDRG FTTLPESEVN FLAKLVALKP
301: GKTVQQMIQN VMQGKDEGAD NLSKEDDSST EGRKPSGLNG RGSVTGRKPL PVRPGMFLET VTKVLGSIYS GNASGITAQH LEWVHQKTLQ VLEEIAY

Arabidopsis Description

PRDA1Protein PEP-RELATED DEVELOPMENT ARRESTED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q1H5E9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.