Factsheet for Bra003257.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 7
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane, vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67665	Canola	plasma membrane	100.0	100.0
Bra014661.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	89.5	89.87
Bra007285.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	78.57	79.91
AT3G56950.2	Thale cress	plasma membrane	86.97	79.62
VIT_08s0040g00400.t01	Wine grape	endoplasmic reticulum	59.24	58.51
KRH66640	Soybean	extracellular	56.3	58.26
Solyc01g056720.2.1	Tomato	endoplasmic reticulum, extracellular	52.1	57.41
KRG95000	Soybean	extracellular	56.72	57.2
GSMUA_Achr5P27600_001	Banana	extracellular	51.26	51.26
Os03t0320000-01	Rice	endoplasmic reticulum, plasma membrane	49.16	46.8
Zm00001d028951_P001	Maize	plasma membrane	47.9	45.78
EER92349	Sorghum	endoplasmic reticulum, plasma membrane	46.64	44.58
TraesCS4D01G179600.1	Wheat	plasma membrane	46.64	44.58
TraesCS4A01G126900.1	Wheat	plasma membrane	47.06	44.27
GSMUA_Achr5P21450_001	Banana	plasma membrane	44.12	40.23
TraesCS4B01G178000.2	Wheat	plasma membrane	46.64	37.25
Bra031946.1-P	Field mustard	extracellular, plasma membrane	26.05	25.94
Bra002151.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	26.47	25.93
Bra040150.1-P	Field mustard	endoplasmic reticulum, plasma membrane	26.47	24.8

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.4	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	EnsemblPlantsGene:Bra003257	EnsemblPlants:Bra003257.1
EnsemblPlants:Bra003257.1-P	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:IPR023271	UniProt:M4CGC4
InterPro:MIP	PFAM:PF00230	PRINTS:PR00783	PANTHER:PTHR19139	PANTHER:PTHR19139:SF128	SUPFAM:SSF81338
TMHMM:TMhelix	UniParc:UPI000254153B	SEG:seg	:	:	:

Description

AT3G56950 (E=2e-106) SIP2;1, SIP2 | SIP2;1; transporter

Coordinates

chrA07:-:12221040..12222330

Molecular Weight (calculated)

26029.6 Da

IEP (calculated)

10.197

GRAVY (calculated)

0.671

Length

238 amino acids

Sequence
(BLAST)

001: MGRISLVVSD LVLSFMWIWA GVLVNVLVHG VLGFSRKDTT GDIVRYLFSV ISMFVFAFLQ KLTKGGLYNP LTALASGVSG GFSSFIFSVV VRIPVEVLGS
101: ILAVKHIIHV FPEIGKGPKL NVAIHHGALT EGILTFFIVM LSLGLTRKIP GSFFMKTWIG SIAKLTLHVL GADLTGGCMN PAAVMGWAYA RGEHITQEHL
201: LVYWLGPVKA TLLAVWFFNV VFKPLTEEQQ EKPKAKSE

Best Arabidopsis Sequence Match ( AT3G56950.2 )
(BLAST)

001: MGRIGLVVTD LVLSFMWIWA GVLVNILVHG VLGFSRTDPS GEIVRYLFSI ISMFIFAYLQ QATKGGLYNP LTALAAGVSG GFSSFIFSVF VRIPVEVIGS
101: ILAVKHIIHV FPEIGKGPKL NVAIHHGALT EGILTFFIVL LSMGLTRKIP GSFFMKTWIG SLAKLTLHIL GSDLTGGCMN PAAVMGWAYA RGEHITKEHL
201: LVYWLGPVKA TLLAVWFFKV VFKPLTEEQE KPKAKSEFCN VFFFYVANST VSTSSIKSEI

Arabidopsis Description

SIP2;1Small and basic intrinsic protein 21 [Source:UniProtKB/TrEMBL;Acc:F4J0V0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.