Factsheet for TraesCS4D01G179600.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G126900.1	Wheat	plasma membrane	98.8	97.23
TraesCS4B01G178000.2	Wheat	plasma membrane	98.39	82.21
Zm00001d028951_P001	Maize	plasma membrane	75.9	75.9
Os03t0320000-01	Rice	endoplasmic reticulum, plasma membrane	75.9	75.6
EER92349	Sorghum	endoplasmic reticulum, plasma membrane	74.3	74.3
GSMUA_Achr5P27600_001	Banana	extracellular	52.21	54.62
VIT_08s0040g00400.t01	Wine grape	endoplasmic reticulum	48.59	50.21
KRH66640	Soybean	extracellular	45.78	49.57
CDX76020	Canola	extracellular, mitochondrion	19.28	48.98
Bra014661.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	45.38	47.68
CDY51268	Canola	endoplasmic reticulum, extracellular, plasma membrane	44.98	47.06
CDY47387	Canola	endoplasmic reticulum, extracellular, plasma membrane	44.58	46.84
CDY08683	Canola	endoplasmic reticulum, extracellular, plasma membrane	44.58	46.84
Solyc01g056720.2.1	Tomato	endoplasmic reticulum, extracellular	40.56	46.76
CDX67665	Canola	plasma membrane	44.58	46.64
Bra003257.1-P	Field mustard	plasma membrane	44.58	46.64
KRG95000	Soybean	extracellular	44.18	46.61
CDX72092	Canola	extracellular	18.07	45.0
CDY27177	Canola	endoplasmic reticulum, extracellular, plasma membrane	42.17	44.87
Bra007285.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	41.77	44.44
CDX72093	Canola	endoplasmic reticulum, plasma membrane, vacuole	16.06	43.96
AT3G56950.2	Thale cress	plasma membrane	45.78	43.85
TraesCS4D01G132200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	30.12	30.74

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.4	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	ncoils:Coil	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0055085	InterPro:IPR023271
InterPro:MIP	PFAM:PF00230	PANTHER:PTHR19139	PANTHER:PTHR19139:SF128	SUPFAM:SSF81338	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS4D01G179600	EnsemblPlants:TraesCS4D01G179600.1	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:312564161..312567250

Molecular Weight (calculated)

26665.1 Da

IEP (calculated)

10.412

GRAVY (calculated)

0.529

Length

249 amino acids

Sequence
(BLAST)

001: MAPAPASSGR IRPWLVVGDL VLAVLWVCAG ALVKLAVYNV LGLGGRPEGE AAKVSLSVVY MFLFAWLESA TGGASYNPLT AISGALASRG GIALYLFTVF
101: VRVPAQVIGA VIGVMLMRFA FPKVGKGAAL SVGVHHGALT EGLATLMVVM VSLTLKKKEQ GFFVKTWIAS IWKMTIHILS SDMTGGIMNP ASAFAWAYAR
201: GDHTSFDHLL VYWLAPLQAT LVGVWVVTFL TKPKKTKEQE ADKNKNKKE

Best Arabidopsis Sequence Match ( AT3G56950.2 )
(BLAST)

001: MGRIGLVVTD LVLSFMWIWA GVLVNILVHG VLGFSRTDPS GEIVRYLFSI ISMFIFAYLQ QATKGGLYNP LTALAAGVSG GFSSFIFSVF VRIPVEVIGS
101: ILAVKHIIHV FPEIGKGPKL NVAIHHGALT EGILTFFIVL LSMGLTRKIP GSFFMKTWIG SLAKLTLHIL GSDLTGGCMN PAAVMGWAYA RGEHITKEHL
201: LVYWLGPVKA TLLAVWFFKV VFKPLTEEQE KPKAKSEFCN VFFFYVANST VSTSSIKSEI

Arabidopsis Description

SIP2;1Small and basic intrinsic protein 21 [Source:UniProtKB/TrEMBL;Acc:F4J0V0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.