CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

nucleus 1
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47387	Canola	endoplasmic reticulum, extracellular, plasma membrane	100.0	100.0
Bra014661.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	97.05	97.05
CDY51268	Canola	endoplasmic reticulum, extracellular, plasma membrane	91.14	90.76
CDX76020	Canola	extracellular, mitochondrion	37.13	89.8
CDX67665	Canola	plasma membrane	89.87	89.5
CDX72092	Canola	extracellular	35.44	84.0
CDY27177	Canola	endoplasmic reticulum, extracellular, plasma membrane	78.06	79.06
AT3G56950.2	Thale cress	plasma membrane	85.65	78.08
CDX72093	Canola	endoplasmic reticulum, plasma membrane, vacuole	28.27	73.63
VIT_08s0040g00400.t01	Wine grape	endoplasmic reticulum	61.6	60.58
KRH66640	Soybean	extracellular	58.23	60.0
KRG95000	Soybean	extracellular	59.07	59.32
Solyc01g056720.2.1	Tomato	endoplasmic reticulum, extracellular	53.16	58.33
GSMUA_Achr5P27600_001	Banana	extracellular	53.16	52.94
Zm00001d028951_P001	Maize	plasma membrane	49.37	46.99
Os03t0320000-01	Rice	endoplasmic reticulum, plasma membrane	48.52	46.0
EER92349	Sorghum	endoplasmic reticulum, plasma membrane	47.68	45.38
TraesCS4D01G179600.1	Wheat	plasma membrane	46.84	44.58
TraesCS4A01G126900.1	Wheat	plasma membrane	47.26	44.27
GSMUA_Achr5P21450_001	Banana	plasma membrane	43.04	39.08
TraesCS4B01G178000.2	Wheat	plasma membrane	46.84	37.25
CDY50883	Canola	extracellular, plasma membrane	26.58	26.36
CDY42904	Canola	plasma membrane	26.16	25.94
CDY66671	Canola	endoplasmic reticulum, extracellular, vacuole	26.16	25.51
CDY38504	Canola	endoplasmic reticulum, extracellular, vacuole	26.16	25.51

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.4	GO:A0A078FA56	UniProt:A0A078FA56	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr
EnsemblPlants:CDY08683	ProteinID:CDY08683	ProteinID:CDY08683.1	ProteinID:CDY47387.1	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00000552001	InterPro:IPR023271	InterPro:MIP	PFAM:PF00230	PRINTS:PR00783
PANTHER:PTHR19139	PANTHER:PTHR19139:SF128	SUPFAM:SSF81338	TMHMM:TMhelix	UniParc:UPI0004EAD122	:

Description

BnaC03g54990DBnaC03g54990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FA56]

Coordinates

chrLK031988:-:45681..47152

Molecular Weight (calculated)

25925.5 Da

IEP (calculated)

10.080

GRAVY (calculated)

0.671

Length

237 amino acids

Sequence
(BLAST)

001: MGRIGIVVSD LVLSFMWTWA GVLVNILVHG VLGFSRKDTT GEIVRYLFSV ISMFVFAFLQ KLSKGGLYNP LTALAAGVTG GFSNFIFTVL VRIPVEVLGS
101: ILGVKHIIHV FPEIGKGPKL NVAIHHGALT EGILTFFIVM LSLGLARKIP GSFFMKTWIG SIAKLTLHVL GADLTGGCMN PAAVMGWAYA RGEHITQEHL
201: LVYWLGPIKA TLLAVWFFNV VFRPLTEEEE KPKAKTD

Best Arabidopsis Sequence Match ( AT3G56950.2 )
(BLAST)

001: MGRIGLVVTD LVLSFMWIWA GVLVNILVHG VLGFSRTDPS GEIVRYLFSI ISMFIFAYLQ QATKGGLYNP LTALAAGVSG GFSSFIFSVF VRIPVEVIGS
101: ILAVKHIIHV FPEIGKGPKL NVAIHHGALT EGILTFFIVL LSMGLTRKIP GSFFMKTWIG SLAKLTLHIL GSDLTGGCMN PAAVMGWAYA RGEHITKEHL
201: LVYWLGPVKA TLLAVWFFKV VFKPLTEEQE KPKAKSEFCN VFFFYVANST VSTSSIKSEI

Arabidopsis Description

SIP2;1Small and basic intrinsic protein 21 [Source:UniProtKB/TrEMBL;Acc:F4J0V0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.