CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

plastid 2
mitochondrion 4
extracellular 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72093	Canola	endoplasmic reticulum, plasma membrane, vacuole	72.45	78.02
Bra014661.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	95.92	39.66
CDY08683	Canola	endoplasmic reticulum, extracellular, plasma membrane	89.8	37.13
CDY47387	Canola	endoplasmic reticulum, extracellular, plasma membrane	89.8	37.13
CDY51268	Canola	endoplasmic reticulum, extracellular, plasma membrane	87.76	36.13
CDX67665	Canola	plasma membrane	84.69	34.87
CDY27177	Canola	endoplasmic reticulum, extracellular, plasma membrane	82.65	34.62
AT3G56950.2	Thale cress	plasma membrane	85.71	32.31
Solyc01g056720.2.1	Tomato	endoplasmic reticulum, extracellular	62.24	28.24
VIT_08s0040g00400.t01	Wine grape	endoplasmic reticulum	69.39	28.22
KRG95000	Soybean	extracellular	63.27	26.27
KRH66640	Soybean	extracellular	59.18	25.22
GSMUA_Achr5P27600_001	Banana	extracellular	57.14	23.53
Zm00001d028951_P001	Maize	plasma membrane	53.06	20.88
Os03t0320000-01	Rice	endoplasmic reticulum, plasma membrane	52.04	20.4
EER92349	Sorghum	endoplasmic reticulum, plasma membrane	51.02	20.08
TraesCS4A01G126900.1	Wheat	plasma membrane	50.0	19.37
TraesCS4D01G179600.1	Wheat	plasma membrane	48.98	19.28
GSMUA_Achr5P21450_001	Banana	plasma membrane	48.98	18.39
TraesCS4B01G178000.2	Wheat	plasma membrane	48.98	16.11
CDY50883	Canola	extracellular, plasma membrane	29.59	12.13
CDY42904	Canola	plasma membrane	28.57	11.72
CDY66671	Canola	endoplasmic reticulum, extracellular, vacuole	26.53	10.7
CDY38504	Canola	endoplasmic reticulum, extracellular, vacuole	26.53	10.7
CDX72092	Canola	extracellular	2.04	2.0

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.4	GO:A0A078CGT6	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	EnsemblPlants:CDX76020
ProteinID:CDX76020	ProteinID:CDX76020.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00126244001	InterPro:IPR023271
InterPro:MIP	PFAM:PF00230	PANTHER:PTHR19139	PANTHER:PTHR19139:SF128	SUPFAM:SSF81338	TMHMM:TMhelix
UniParc:UPI0004EE9E2F	:	:	:	:	:

Description

BnaA04g02840D

Coordinates

chrLK031806:-:242489..243119

Molecular Weight (calculated)

10874.5 Da

IEP (calculated)

9.170

GRAVY (calculated)

0.263

Length

98 amino acids

Sequence
(BLAST)

1: MLSLGLARKI PGSFFMKTWI GSIAKLTLHV LGADLTGGCM NPAAVMGWAY ARGEHITQEH LLVYWLGPIK ATLLAVWFFN VVFKPLTEEE EKPKAKTD

Best Arabidopsis Sequence Match ( AT3G56950.1 )
(BLAST)

001: MGRIGLVVTD LVLSFMWIWA GVLVNILVHG VLGFSRTDPS GEIVRYLFSI ISMFIFAYLQ QATKGGLYNP LTALAAGVSG GFSSFIFSVF VRIPVEVIGS
101: ILAVKHIIHV FPEIGKGPKL NVAIHHGALT EGILTFFIVL LSMGLTRKIP GSFFMKTWIG SLAKLTLHIL GSDLTGGCMN PAAVMGWAYA RGEHITKEHL
201: LVYWLGPVKA TLLAVWFFKV VFKPLTEEQE KPKAKSE

Arabidopsis Description

SIP2;1Small and basic intrinsic protein 21 [Source:UniProtKB/TrEMBL;Acc:F4J0V0]
SUBAcon: [plasma membrane,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.