Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G179600.1 | Wheat | plasma membrane | 97.23 | 98.8 |
| TraesCS4B01G178000.2 | Wheat | plasma membrane | 98.02 | 83.22 |
| Zm00001d028951_P001 | Maize | plasma membrane | 74.7 | 75.9 |
| Os03t0320000-01 | Rice | endoplasmic reticulum, plasma membrane | 73.91 | 74.8 |
| EER92349 | Sorghum | endoplasmic reticulum, plasma membrane | 73.12 | 74.3 |
| GSMUA_Achr5P27600_001 | Banana | extracellular | 52.17 | 55.46 |
| VIT_08s0040g00400.t01 | Wine grape | endoplasmic reticulum | 48.62 | 51.04 |
| KRH66640 | Soybean | extracellular | 45.85 | 50.43 |
| CDX76020 | Canola | extracellular, mitochondrion | 19.37 | 50.0 |
| Bra014661.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 45.06 | 48.1 |
| CDY51268 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 44.66 | 47.48 |
| KRG95000 | Soybean | extracellular | 44.27 | 47.46 |
| CDY47387 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 44.27 | 47.26 |
| CDY08683 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 44.27 | 47.26 |
| CDX67665 | Canola | plasma membrane | 44.27 | 47.06 |
| Bra003257.1-P | Field mustard | plasma membrane | 44.27 | 47.06 |
| Solyc01g056720.2.1 | Tomato | endoplasmic reticulum, extracellular | 39.92 | 46.76 |
| CDY27177 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 41.9 | 45.3 |
| CDX72092 | Canola | extracellular | 17.79 | 45.0 |
| Bra007285.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 41.5 | 44.87 |
| AT3G56950.2 | Thale cress | plasma membrane | 45.45 | 44.23 |
| CDX72093 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 15.81 | 43.96 |
| TraesCS4A01G180200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 30.04 | 31.41 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.4 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0055085 | InterPro:IPR023271 | InterPro:MIP |
| PFAM:PF00230 | PANTHER:PTHR19139 | PANTHER:PTHR19139:SF128 | SUPFAM:SSF81338 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS4A01G126900 |
| EnsemblPlants:TraesCS4A01G126900.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:163913675..163918276
Molecular Weight (calculated)
27045.6 Da
IEP (calculated)
10.412
GRAVY (calculated)
0.521
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPAPAPAPA SSGRIRPWLV VGDLVLAVLW VCAGALVKLA VYNVLGLGGR PEGEAAKVSL SVVYMFLFAW LESATGGASY NPLTAISGAL ASRGGIALYL
101: FTVFVRVPAQ VIGAVIGVML MRFTFPKVGK GAALSVGVHH GALTEGLATL MVVMVSLTLK KKEQGFFVKT WIASIWKMTI HILSSDMTGG IMNPASAFAW
201: AYARGDHTSF DHLLVYWLAP LQATLVAVWV VTFLTKPKKT KEQEADKNKN KKE
101: FTVFVRVPAQ VIGAVIGVML MRFTFPKVGK GAALSVGVHH GALTEGLATL MVVMVSLTLK KKEQGFFVKT WIASIWKMTI HILSSDMTGG IMNPASAFAW
201: AYARGDHTSF DHLLVYWLAP LQATLVAVWV VTFLTKPKKT KEQEADKNKN KKE
001: MGRIGLVVTD LVLSFMWIWA GVLVNILVHG VLGFSRTDPS GEIVRYLFSI ISMFIFAYLQ QATKGGLYNP LTALAAGVSG GFSSFIFSVF VRIPVEVIGS
101: ILAVKHIIHV FPEIGKGPKL NVAIHHGALT EGILTFFIVL LSMGLTRKIP GSFFMKTWIG SLAKLTLHIL GSDLTGGCMN PAAVMGWAYA RGEHITKEHL
201: LVYWLGPVKA TLLAVWFFKV VFKPLTEEQE KPKAKSEFCN VFFFYVANST VSTSSIKSEI
101: ILAVKHIIHV FPEIGKGPKL NVAIHHGALT EGILTFFIVL LSMGLTRKIP GSFFMKTWIG SLAKLTLHIL GSDLTGGCMN PAAVMGWAYA RGEHITKEHL
201: LVYWLGPVKA TLLAVWFFKV VFKPLTEEQE KPKAKSEFCN VFFFYVANST VSTSSIKSEI
Arabidopsis Description
SIP2;1Small and basic intrinsic protein 21 [Source:UniProtKB/TrEMBL;Acc:F4J0V0]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.