CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, plasma membrane, endoplasmic reticulum

Predictor Summary:

plastid 1
extracellular 5
golgi 4
plasma membrane 5
endoplasmic reticulum 5
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67665	Canola	plasma membrane	96.64	96.64
CDY08683	Canola	endoplasmic reticulum, extracellular, plasma membrane	90.76	91.14
CDY47387	Canola	endoplasmic reticulum, extracellular, plasma membrane	90.76	91.14
CDX72092	Canola	extracellular	36.97	88.0
CDX76020	Canola	extracellular, mitochondrion	36.13	87.76
CDY27177	Canola	endoplasmic reticulum, extracellular, plasma membrane	80.67	82.05
AT3G56950.2	Thale cress	plasma membrane	89.5	81.92
CDX72093	Canola	endoplasmic reticulum, plasma membrane, vacuole	30.25	79.12
VIT_08s0040g00400.t01	Wine grape	endoplasmic reticulum	61.34	60.58
KRG95000	Soybean	extracellular	58.4	58.9
Solyc01g056720.2.1	Tomato	endoplasmic reticulum, extracellular	53.36	58.8
KRH66640	Soybean	extracellular	56.72	58.7
GSMUA_Achr5P27600_001	Banana	extracellular	52.94	52.94
Os03t0320000-01	Rice	endoplasmic reticulum, plasma membrane	49.58	47.2
Zm00001d028951_P001	Maize	plasma membrane	48.32	46.18
EER92349	Sorghum	endoplasmic reticulum, plasma membrane	47.06	44.98
TraesCS4D01G179600.1	Wheat	plasma membrane	47.06	44.98
TraesCS4A01G126900.1	Wheat	plasma membrane	47.48	44.66
GSMUA_Achr5P21450_001	Banana	plasma membrane	44.54	40.61
TraesCS4B01G178000.2	Wheat	plasma membrane	47.06	37.58
CDY50883	Canola	extracellular, plasma membrane	26.47	26.36
CDY66671	Canola	endoplasmic reticulum, extracellular, vacuole	26.89	26.34
CDY38504	Canola	endoplasmic reticulum, extracellular, vacuole	26.89	26.34
CDY42904	Canola	plasma membrane	26.05	25.94

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.4	GO:A0A078IQ79	UniProt:A0A078IQ79	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr
EnsemblPlants:CDY51268	ProteinID:CDY51268	ProteinID:CDY51268.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00003040001	InterPro:IPR023271	InterPro:MIP	PFAM:PF00230	PRINTS:PR00783	PANTHER:PTHR19139
PANTHER:PTHR19139:SF128	SUPFAM:SSF81338	TMHMM:TMhelix	UniParc:UPI0004EE327E	SEG:seg	:

Description

BnaCnng20470DBnaCnng20470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQ79]

Coordinates

chrLK032979:-:76734..78218

Molecular Weight (calculated)

26015.5 Da

IEP (calculated)

10.197

GRAVY (calculated)

0.662

Length

238 amino acids

Sequence
(BLAST)

001: MGRISLVVSD LVLSFMWIWA GVLVNILVHG VLGFSRKDTT GDIVRYLFSV ISMFVFAFLQ KLTKGGLYNP LTALASGVSG GFSSFIFSVA VRIPVEVLGS
101: ILAVKHIIHV FPEIGKGPKL NVAIHHGALT EGILTFFIVM LSLGLTRKIP GSFFMKTWIG SIAKLTLHVL GADLTGGCMN PAAVMGWAYA RGEHITQEHL
201: LVYWLGPVKA TLLAVWFFNV VFKPLTEEQQ EKPKAKSE

Best Arabidopsis Sequence Match ( AT3G56950.2 )
(BLAST)

001: MGRIGLVVTD LVLSFMWIWA GVLVNILVHG VLGFSRTDPS GEIVRYLFSI ISMFIFAYLQ QATKGGLYNP LTALAAGVSG GFSSFIFSVF VRIPVEVIGS
101: ILAVKHIIHV FPEIGKGPKL NVAIHHGALT EGILTFFIVL LSMGLTRKIP GSFFMKTWIG SLAKLTLHIL GSDLTGGCMN PAAVMGWAYA RGEHITKEHL
201: LVYWLGPVKA TLLAVWFFKV VFKPLTEEQE KPKAKSEFCN VFFFYVANST VSTSSIKSEI

Arabidopsis Description

SIP2;1Small and basic intrinsic protein 21 [Source:UniProtKB/TrEMBL;Acc:F4J0V0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.