CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 4
golgi 4
plasma membrane 5
endoplasmic reticulum 5
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76020	Canola	extracellular, mitochondrion	78.02	72.45
Bra007285.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	79.12	30.77
CDY27177	Canola	endoplasmic reticulum, extracellular, plasma membrane	79.12	30.77
CDY51268	Canola	endoplasmic reticulum, extracellular, plasma membrane	79.12	30.25
CDY08683	Canola	endoplasmic reticulum, extracellular, plasma membrane	73.63	28.27
CDY47387	Canola	endoplasmic reticulum, extracellular, plasma membrane	73.63	28.27
CDX67665	Canola	plasma membrane	73.63	28.15
AT3G56950.2	Thale cress	plasma membrane	80.22	28.08
Solyc01g056720.2.1	Tomato	endoplasmic reticulum, extracellular	59.34	25.0
VIT_08s0040g00400.t01	Wine grape	endoplasmic reticulum	64.84	24.48
KRG95000	Soybean	extracellular	58.24	22.46
KRH66640	Soybean	extracellular	52.75	20.87
GSMUA_Achr5P27600_001	Banana	extracellular	51.65	19.75
Os03t0320000-01	Rice	endoplasmic reticulum, plasma membrane	50.55	18.4
Zm00001d028951_P001	Maize	plasma membrane	48.35	17.67
GSMUA_Achr5P21450_001	Banana	plasma membrane	50.55	17.62
EER92349	Sorghum	endoplasmic reticulum, plasma membrane	46.15	16.87
TraesCS4D01G179600.1	Wheat	plasma membrane	43.96	16.06
TraesCS4A01G126900.1	Wheat	plasma membrane	43.96	15.81
TraesCS4B01G178000.2	Wheat	plasma membrane	43.96	13.42
CDY50883	Canola	extracellular, plasma membrane	30.77	11.72
CDY42904	Canola	plasma membrane	29.67	11.3
CDY66671	Canola	endoplasmic reticulum, extracellular, vacuole	28.57	10.7
CDY38504	Canola	endoplasmic reticulum, extracellular, vacuole	28.57	10.7
CDX72092	Canola	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:CDX72093	EnsemblPlantsGene:GSBRNA2T00155893001	Gene3D:1.20.1080.10	GO:A0A078CAS4	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr
InterPro:IPR023271	PANTHER:PTHR19139	PANTHER:PTHR19139:SF128	PFscan:PS51257	ProteinID:CDX72093	ProteinID:CDX72093.1
SUPFAM:SSF81338	TMHMM:TMhelix	UniParc:UPI0004EDFF2A	MapMan:35.1	:	:

Description

BnaC08g27810D

Coordinates

chrLK031795:+:2369317..2369670

Molecular Weight (calculated)

10166.6 Da

IEP (calculated)

9.170

GRAVY (calculated)

0.278

Length

91 amino acids

Sequence
(BLAST)

1: MKTWISSIAK LTLHVLGVGI TGGCMNPAAV MGWAYARGEH ITKEHLLVYW LGSVMATLLV VWFFNVVFKP LTEEQEKPKA KSELSKSVNE F

Best Arabidopsis Sequence Match ( AT3G56950.1 )
(BLAST)

001: MGRIGLVVTD LVLSFMWIWA GVLVNILVHG VLGFSRTDPS GEIVRYLFSI ISMFIFAYLQ QATKGGLYNP LTALAAGVSG GFSSFIFSVF VRIPVEVIGS
101: ILAVKHIIHV FPEIGKGPKL NVAIHHGALT EGILTFFIVL LSMGLTRKIP GSFFMKTWIG SLAKLTLHIL GSDLTGGCMN PAAVMGWAYA RGEHITKEHL
201: LVYWLGPVKA TLLAVWFFKV VFKPLTEEQE KPKAKSE

Arabidopsis Description

SIP2;1Small and basic intrinsic protein 21 [Source:UniProtKB/TrEMBL;Acc:F4J0V0]
SUBAcon: [golgi,plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.