Factsheet for TraesCS4B01G178000.2

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 4
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G179600.1	Wheat	plasma membrane	82.21	98.39
TraesCS4A01G126900.1	Wheat	plasma membrane	83.22	98.02
Zm00001d028951_P001	Maize	plasma membrane	63.09	75.5
Os03t0320000-01	Rice	endoplasmic reticulum, plasma membrane	62.75	74.8
EER92349	Sorghum	endoplasmic reticulum, plasma membrane	61.41	73.49
GSMUA_Achr5P27600_001	Banana	extracellular	43.62	54.62
VIT_08s0040g00400.t01	Wine grape	endoplasmic reticulum	40.27	49.79
KRH66640	Soybean	extracellular	37.92	49.13
CDX76020	Canola	extracellular, mitochondrion	16.11	48.98
Bra014661.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	37.92	47.68
CDY51268	Canola	endoplasmic reticulum, extracellular, plasma membrane	37.58	47.06
CDY47387	Canola	endoplasmic reticulum, extracellular, plasma membrane	37.25	46.84
CDY08683	Canola	endoplasmic reticulum, extracellular, plasma membrane	37.25	46.84
Solyc01g056720.2.1	Tomato	endoplasmic reticulum, extracellular	33.89	46.76
CDX67665	Canola	plasma membrane	37.25	46.64
Bra003257.1-P	Field mustard	plasma membrane	37.25	46.64
KRG95000	Soybean	extracellular	36.58	46.19
CDX72092	Canola	extracellular	15.1	45.0
CDY27177	Canola	endoplasmic reticulum, extracellular, plasma membrane	35.23	44.87
Bra007285.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	34.9	44.44
CDX72093	Canola	endoplasmic reticulum, plasma membrane, vacuole	13.42	43.96
AT3G56950.2	Thale cress	plasma membrane	38.26	43.85
TraesCS4B01G137500.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	25.17	30.74

Protein Annotations

EnsemblPlants:TraesCS4B01G178000.2	EnsemblPlantsGene:TraesCS4B01G178000	Gene3D:1.20.1080.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	InterPro:IPR023271	PANTHER:PTHR19139
PANTHER:PTHR19139:SF128	SEG:seg	SUPFAM:SSF81338	TMHMM:TMhelix	MapMan:24.3.1.4	:

Description

No Description!

Coordinates

chr4B:+:389114184..389117963

Molecular Weight (calculated)

31867.6 Da

IEP (calculated)

10.048

GRAVY (calculated)

0.554

Length

298 amino acids

Sequence
(BLAST)

001: MAPAPAPAPA SSGRIRPWLV VGDLVLAVLW VCAGALVKLA VYNVLGLGGR PEGEAAKVSL SVVYMFLFAW LESATGGASY NPLTAISGAL ASRGGLALYL
101: FTVFVRVPAQ VIGAVIGVML MRFAFPKVGK GAALSVGVHH GALTEGLATL MVVMVSLTLK KKEQGFFVKT WIASIWKMTI HILSSDMTGG IMNPASYISA
201: SQHSIILCSA AMCGDQLICE MFISSKCAMV ISNFGHKIKQ FAFAWAYARG DHTSFDHLLV YWLAPLQATL VGVWVVTFLT KPKNTKEQAA DKNKNKKE

Best Arabidopsis Sequence Match ( AT3G56950.2 )
(BLAST)

001: MGRIGLVVTD LVLSFMWIWA GVLVNILVHG VLGFSRTDPS GEIVRYLFSI ISMFIFAYLQ QATKGGLYNP LTALAAGVSG GFSSFIFSVF VRIPVEVIGS
101: ILAVKHIIHV FPEIGKGPKL NVAIHHGALT EGILTFFIVL LSMGLTRKIP GSFFMKTWIG SLAKLTLHIL GSDLTGGCMN PAAVMGWAYA RGEHITKEHL
201: LVYWLGPVKA TLLAVWFFKV VFKPLTEEQE KPKAKSEFCN VFFFYVANST VSTSSIKSEI

Arabidopsis Description

SIP2;1Small and basic intrinsic protein 21 [Source:UniProtKB/TrEMBL;Acc:F4J0V0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.