Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11265 | Canola | nucleus | 96.97 | 97.17 |
| Bra009519.1-P | Field mustard | nucleus | 79.19 | 77.47 |
| AT5G03670.1 | Thale cress | nucleus | 78.99 | 75.78 |
| Bra023069.1-P | Field mustard | nucleus | 33.94 | 42.11 |
| KRH67860 | Soybean | nucleus | 42.83 | 41.16 |
| KRG96149 | Soybean | nucleus | 43.03 | 41.12 |
| Bra005267.1-P | Field mustard | nucleus | 33.74 | 40.93 |
| VIT_08s0007g03780.t01 | Wine grape | nucleus | 43.43 | 40.57 |
| Bra017237.1-P | Field mustard | nucleus | 33.74 | 40.44 |
| Solyc10g083530.1.1 | Tomato | nucleus | 31.31 | 39.54 |
| PGSC0003DMT400072630 | Potato | nucleus | 32.73 | 38.12 |
| KRH20039 | Soybean | nucleus | 36.77 | 37.14 |
| PGSC0003DMT400006901 | Potato | nucleus | 36.36 | 36.81 |
| KRH32670 | Soybean | nucleus | 36.57 | 36.42 |
| Solyc09g009220.2.1 | Tomato | nucleus | 34.55 | 35.48 |
Protein Annotations
Description
AT5G03670 (E=3e-167) | unknown protein
Coordinates
chrA03:+:538544..541103
Molecular Weight (calculated)
55884.2 Da
IEP (calculated)
4.583
GRAVY (calculated)
-0.758
Length
495 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPRHLKDL LEEDQEPFQL QSYISDRRRQ ITHLQVKKRR PVSQIAGLPS RFCRNACFFS LRESPDPKKS PLFEPKSPNR SQNAIFVNIP ARTASMLLEA
101: AVRIQKQSSE GSKTKTRNAG NAFGIFGSVL KKLTHRKKRE ISGGGVSSVK DMLRWESPVV RKIVTKRKGE EQNSSQTQKT ASEKQFSRRS SSSGVWSESV
201: TNGERSGECD FEPSISSSSG SGGLDELACG LMNGSDLSED KRFCESPFHF VLQTTMSSPG GFRTPNFTSP AASPRHDCPE MKKDSYEVEK LKKLEVEEEE
301: EEEEDKEQSS PVSVLDPPFE DDDEDIHMDD NNITSSFRSA QKAKHLLLQK LCRFEQLAGL DPLELEETMS DQVTEEDSEE EEMIVLKTYF EDMAEVPEGI
401: EALISDLVAE ELQYNSLLQD GEAQVAKRVC ERLRSWRDVE SNTIDMMVEH DFRTESLGSW RSKNEAEVAE AVVEIELEIF EDLVEELSQD IGGNR
101: AVRIQKQSSE GSKTKTRNAG NAFGIFGSVL KKLTHRKKRE ISGGGVSSVK DMLRWESPVV RKIVTKRKGE EQNSSQTQKT ASEKQFSRRS SSSGVWSESV
201: TNGERSGECD FEPSISSSSG SGGLDELACG LMNGSDLSED KRFCESPFHF VLQTTMSSPG GFRTPNFTSP AASPRHDCPE MKKDSYEVEK LKKLEVEEEE
301: EEEEDKEQSS PVSVLDPPFE DDDEDIHMDD NNITSSFRSA QKAKHLLLQK LCRFEQLAGL DPLELEETMS DQVTEEDSEE EEMIVLKTYF EDMAEVPEGI
401: EALISDLVAE ELQYNSLLQD GEAQVAKRVC ERLRSWRDVE SNTIDMMVEH DFRTESLGSW RSKNEAEVAE AVVEIELEIF EDLVEELSQD IGGNR
001: MASQRHLKDL LEEDQEPFQL QSYISDRRCQ INAHVTHLQV KKRRPISQNA GLPSRFCRNA CFFSLRESPD PKKSPLFELK SPNRSQNAIF VNIPARTASI
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR
Arabidopsis Description
TRM28 [Source:UniProtKB/TrEMBL;Acc:A0A178UNJ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.