Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400002331 | |
| PGSC0003DMT400067082 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36420.1 | PGSC0003DMT400002331 | AT4G09570.1 | 19130088 |
| AT2G36420.1 | PGSC0003DMT400067082 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g083530.1.1 | Tomato | nucleus | 80.0 | 86.73 |
| PGSC0003DMT400006901 | Potato | nucleus | 51.06 | 44.38 |
| VIT_08s0007g03780.t01 | Wine grape | nucleus | 48.71 | 39.06 |
| CDX84558 | Canola | nucleus | 34.59 | 36.84 |
| Bra023069.1-P | Field mustard | nucleus | 34.59 | 36.84 |
| AT2G36420.1 | Thale cress | nucleus | 37.18 | 35.99 |
| Bra017237.1-P | Field mustard | nucleus | 34.82 | 35.84 |
| CDX75038 | Canola | nucleus | 36.71 | 35.45 |
| CDX79680 | Canola | nucleus | 33.41 | 35.32 |
| KRH67860 | Soybean | nucleus | 42.59 | 35.15 |
| KRG96149 | Soybean | nucleus | 42.35 | 34.75 |
| Bra005267.1-P | Field mustard | nucleus | 33.18 | 34.56 |
| CDY43718 | Canola | mitochondrion, nucleus | 23.29 | 34.26 |
| KRH20039 | Soybean | nucleus | 38.59 | 33.47 |
| CDX80882 | Canola | nucleus | 39.06 | 33.07 |
| CDY11265 | Canola | nucleus | 38.35 | 33.0 |
| CDX84125 | Canola | nucleus | 31.06 | 32.92 |
| Bra005776.1-P | Field mustard | nucleus | 38.12 | 32.73 |
| Bra009519.1-P | Field mustard | nucleus | 38.82 | 32.61 |
| KRH32670 | Soybean | nucleus | 37.65 | 32.19 |
| CDX70294 | Canola | nucleus | 38.12 | 32.02 |
| AT5G03670.1 | Thale cress | nucleus | 38.59 | 31.78 |
| CDY10365 | Canola | nucleus | 38.12 | 25.76 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400072630 | EnsemblPlantsGene:PGSC0003DMG400028260 | EntrezGene:102598987 | ncoils:Coil | PANTHER:PTHR33623 | PANTHER:PTHR33623:SF5 |
| PGSC:PGSC0003DMG400028260 | RefSeq:XP_006339120.1 | SEG:seg | UniParc:UPI00029500C6 | UniProt:M1CQP4 | MapMan:35.2 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028260]
Coordinates
chr10:+:55659728..55664320
Molecular Weight (calculated)
48599.6 Da
IEP (calculated)
4.465
GRAVY (calculated)
-0.772
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQKHLHELL KEDQEPFYTA NKRFHLKRLN FSSSKTSSLQ IKKFQKQINQ TPSSKLCKNT CFFSFGESPE LRKSPLCLPS PAPAKSPENG KFVLNVPART
101: AALLLEAAMR IQKQQSSSKP KTQIKKVKFG VFGSILKKLK DRNSDKNDEK SFSCSCNNSR VNSEINEGKL IDLENYSNYG DFGSSPLSPF RFSLQRCPST
201: SGYVSPEFTS PAASPVCHKK EDKENYETII GLASIDQLEE EEDKEQCSPV SVLDPPFEEE DGHANGDEDE DEDSDLDCNY ALVQRAQQQL LSKLRRFEKL
301: AELDPIELEK ILLEEEEEEE EEDDDRVEEE EYQVSNLIFE EKFEVKSLNY GEAVFGRECK KIDLSSQELR SNTIDMMVKS NLKSEFDDWN EFQDQREETV
401: IEFAFSIFGL LVDELGEELI HLAHS
101: AALLLEAAMR IQKQQSSSKP KTQIKKVKFG VFGSILKKLK DRNSDKNDEK SFSCSCNNSR VNSEINEGKL IDLENYSNYG DFGSSPLSPF RFSLQRCPST
201: SGYVSPEFTS PAASPVCHKK EDKENYETII GLASIDQLEE EEDKEQCSPV SVLDPPFEEE DGHANGDEDE DEDSDLDCNY ALVQRAQQQL LSKLRRFEKL
301: AELDPIELEK ILLEEEEEEE EEDDDRVEEE EYQVSNLIFE EKFEVKSLNY GEAVFGRECK KIDLSSQELR SNTIDMMVKS NLKSEFDDWN EFQDQREETV
401: IEFAFSIFGL LVDELGEELI HLAHS
001: MAEKEKKKHL HEFLEDDQEP FHLNHYIGNL RSQMGCSDMR VKKRKSDNVA TFPPGLFSCE NSCFFAAHKS PDPRKSPLFE LRSPGKKKIR DGRVFLQIPA
101: RTAAILLDAA ARIQKQQSEK AKTNKARTRG NGFGMFGSVL KLLTYRITKP RLDNADGNAV SLERGSEPTS SSRRERIVEI SDKCFCESPF HFVLQTTPSS
201: SGHQTPHFTS TATSPARRST EDEDSDETES LEKVRGQEEE DKEEEDKEQC SPVSVLDPLE EEEEDEDHHQ HEPDPPNNLS CSFEIVQRAK RRLLKKLRRF
301: EKLAGLDPVE LEGKMSEEED EEEEEYEESE EDDNIRIYDS DEEYEDVDEA MARESRCAED EKRKKNDERQ KKWRMMNAWR VGLGAEEDVD AVVRKDLREE
401: AGEWTRHGGE VEEAVSDLEH SIFFVLIDEF SRELVSSFL
101: RTAAILLDAA ARIQKQQSEK AKTNKARTRG NGFGMFGSVL KLLTYRITKP RLDNADGNAV SLERGSEPTS SSRRERIVEI SDKCFCESPF HFVLQTTPSS
201: SGHQTPHFTS TATSPARRST EDEDSDETES LEKVRGQEEE DKEEEDKEQC SPVSVLDPLE EEEEDEDHHQ HEPDPPNNLS CSFEIVQRAK RRLLKKLRRF
301: EKLAGLDPVE LEGKMSEEED EEEEEYEESE EDDNIRIYDS DEEYEDVDEA MARESRCAED EKRKKNDERQ KKWRMMNAWR VGLGAEEDVD AVVRKDLREE
401: AGEWTRHGGE VEEAVSDLEH SIFFVLIDEF SRELVSSFL
Arabidopsis Description
Nucleolin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SJR3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.