Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36420.1 | CDX90725 | AT4G09570.1 | 19130088 |
| AT2G36420.1 | CDY05064 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017237.1-P | Field mustard | nucleus | 89.97 | 62.95 |
| CDX75038 | Canola | nucleus | 85.12 | 55.91 |
| AT2G36420.1 | Thale cress | nucleus | 77.16 | 50.8 |
| CDX84558 | Canola | nucleus | 69.9 | 50.63 |
| CDX79680 | Canola | nucleus | 69.9 | 50.25 |
| CDX84125 | Canola | nucleus | 68.17 | 49.13 |
| PGSC0003DMT400072630 | Potato | nucleus | 34.26 | 23.29 |
| Solyc10g083530.1.1 | Tomato | nucleus | 31.14 | 22.96 |
| CDY11265 | Canola | nucleus | 38.41 | 22.47 |
| KRH20039 | Soybean | nucleus | 36.68 | 21.63 |
| KRH67860 | Soybean | nucleus | 38.06 | 21.36 |
| CDX70294 | Canola | nucleus | 37.37 | 21.34 |
| CDX80882 | Canola | nucleus | 37.02 | 21.31 |
| KRG96149 | Soybean | nucleus | 37.37 | 20.85 |
| PGSC0003DMT400006901 | Potato | nucleus | 33.91 | 20.04 |
| VIT_08s0007g03780.t01 | Wine grape | nucleus | 36.68 | 20.0 |
| KRH32670 | Soybean | nucleus | 34.26 | 19.92 |
| Solyc09g009220.2.1 | Tomato | nucleus | 32.53 | 19.5 |
| CDY10365 | Canola | nucleus | 36.68 | 16.85 |
Protein Annotations
| EnsemblPlants:CDY43718 | EnsemblPlantsGene:GSBRNA2T00077204001 | PANTHER:PTHR33623 | PANTHER:PTHR33623:SF5 | ProteinID:CDY43718 | ProteinID:CDY43718.1 |
| SEG:seg | UniParc:UPI0004EF0F25 | UniProt:A0A078I3M1 | MapMan:35.2 | : | : |
Description
BnaAnng07330DBnaAnng07330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I3M1]
Coordinates
chrLK032567:-:18272..25385
Molecular Weight (calculated)
33156.0 Da
IEP (calculated)
4.264
GRAVY (calculated)
-0.933
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MFGSVLKRLT NRKAKPCLHS ADGNAVSSER ESEQTSSSTR RERLVEVDDK WFCESPFHFV LHTTPSTSGN RTPHFTSTAT SPARRSTEDE DSDETESLEK
101: VRGQEEEEEQ CSPVSVLDPL EEEEDDKDHH QQEPGHLNLP SCSFEVVQRA KRRLLKKLRR FEKLAGLEPA DLEGKMSEEE EVCEESEEDD NIRVYDWDEE
201: YEDVNEAMAR ESGCMQEERQ EKWMMLNAWR VGMGADVYVD AVVQKDMRGE AGQWTKHGGE VEETVADLEL SIFLFLIDEF SHELVSSQS
101: VRGQEEEEEQ CSPVSVLDPL EEEEDDKDHH QQEPGHLNLP SCSFEVVQRA KRRLLKKLRR FEKLAGLEPA DLEGKMSEEE EVCEESEEDD NIRVYDWDEE
201: YEDVNEAMAR ESGCMQEERQ EKWMMLNAWR VGMGADVYVD AVVQKDMRGE AGQWTKHGGE VEETVADLEL SIFLFLIDEF SHELVSSQS
001: MAEKEKKKHL HEFLEDDQEP FHLNHYIGNL RSQMGCSDMR VKKRKSDNVA TFPPGLFSCE NSCFFAAHKS PDPRKSPLFE LRSPGKKKIR DGRVFLQIPA
101: RTAAILLDAA ARIQKQQSEK AKTNKARTRG NGFGMFGSVL KLLTYRITKP RLDNADGNAV SLERGSEPTS SSRRERIVEI SDKCFCESPF HFVLQTTPSS
201: SGHQTPHFTS TATSPARRST EDEDSDETES LEKVRGQEEE DKEEEDKEQC SPVSVLDPLE EEEEDEDHHQ HEPDPPNNLS CSFEIVQRAK RRLLKKLRRF
301: EKLAGLDPVE LEGKMSEEED EEEEEYEESE EDDNIRIYDS DEEYEDVDEA MARESRCAED EKRKKNDERQ KKWRMMNAWR VGLGAEEDVD AVVRKDLREE
401: AGEWTRHGGE VEEAVSDLEH SIFFVLIDEF SRELVSSFL
101: RTAAILLDAA ARIQKQQSEK AKTNKARTRG NGFGMFGSVL KLLTYRITKP RLDNADGNAV SLERGSEPTS SSRRERIVEI SDKCFCESPF HFVLQTTPSS
201: SGHQTPHFTS TATSPARRST EDEDSDETES LEKVRGQEEE DKEEEDKEQC SPVSVLDPLE EEEEDEDHHQ HEPDPPNNLS CSFEIVQRAK RRLLKKLRRF
301: EKLAGLDPVE LEGKMSEEED EEEEEYEESE EDDNIRIYDS DEEYEDVDEA MARESRCAED EKRKKNDERQ KKWRMMNAWR VGLGAEEDVD AVVRKDLREE
401: AGEWTRHGGE VEEAVSDLEH SIFFVLIDEF SRELVSSFL
Arabidopsis Description
Nucleolin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SJR3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.