Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36420.1 | KRG91803 | AT4G09570.1 | 19130088 |
| AT2G36420.1 | KRH34983 | AT4G09570.1 | 19130088 |
| AT2G36420.1 | KRH34984 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH20039 | Soybean | nucleus | 73.44 | 74.49 |
| KRG96149 | Soybean | nucleus | 49.9 | 47.88 |
| KRH67860 | Soybean | nucleus | 48.89 | 47.18 |
| VIT_08s0007g03780.t01 | Wine grape | nucleus | 46.68 | 43.77 |
| PGSC0003DMT400006901 | Potato | nucleus | 41.45 | 42.13 |
| Solyc09g009220.2.1 | Tomato | nucleus | 40.85 | 42.12 |
| Solyc10g083530.1.1 | Tomato | nucleus | 30.18 | 38.27 |
| PGSC0003DMT400072630 | Potato | nucleus | 32.19 | 37.65 |
| CDX80882 | Canola | nucleus | 37.22 | 36.85 |
| AT5G03670.1 | Thale cress | nucleus | 38.23 | 36.82 |
| Bra009519.1-P | Field mustard | nucleus | 37.42 | 36.76 |
| Bra005776.1-P | Field mustard | nucleus | 36.42 | 36.57 |
| CDY11265 | Canola | nucleus | 36.22 | 36.44 |
| CDX70294 | Canola | nucleus | 37.02 | 36.36 |
| CDX84558 | Canola | nucleus | 27.77 | 34.59 |
| Bra023069.1-P | Field mustard | nucleus | 27.77 | 34.59 |
| CDY43718 | Canola | mitochondrion, nucleus | 19.92 | 34.26 |
| CDX79680 | Canola | nucleus | 27.57 | 34.08 |
| AT2G36420.1 | Thale cress | nucleus | 29.18 | 33.03 |
| CDX75038 | Canola | nucleus | 28.57 | 32.27 |
| Bra017237.1-P | Field mustard | nucleus | 26.76 | 32.2 |
| CDX84125 | Canola | nucleus | 24.35 | 30.17 |
| Bra005267.1-P | Field mustard | nucleus | 24.75 | 30.15 |
| CDY10365 | Canola | nucleus | 36.82 | 29.09 |
Protein Annotations
| EMBL:ACUP02006148 | EnsemblPlants:KRH32670 | EnsemblPlantsGene:GLYMA_10G067100 | EntrezGene:100813767 | PANTHER:PTHR33623 | PANTHER:PTHR33623:SF5 |
| ProteinID:KRH32670 | ProteinID:KRH32670.1 | SEG:seg | UniParc:UPI00023C9D77 | UniProt:K7LHT3 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr10:-:6584854..6588987
Molecular Weight (calculated)
56756.1 Da
IEP (calculated)
4.560
GRAVY (calculated)
-0.775
Length
497 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEKLHLREF LQEDQEPFLL KHYISERRSQ LKRVTPSPNS TLQQHLKKNP QNSNFPLNKC FLTSLQNATK SPLLLSPKKS TPLTLRPSNA KTASLLLEAA
101: LRIHTNKNAK PKPKPNRALG IFGSLFKKLT NRKRETIEGG AVAKVNKDSD DDDVVVVGSC EVGFTCSCNG RPSSAVWSES NEDKSLDLES SSSGNSFDDS
201: VVEEIEFLNK GKLINADDHG FFCQSPFRFS LQRSPDYSGR RTPVFSSPAA APCRRKTEDK EINGADGVNK FHSGEEEEDK EQCSPVSVLD PPFDDDNDDG
301: HDHDNGDDVF DLDCSYANVQ RTKQHLLDRL CRFEKLAELD PVELEKRMLD HEDREYETFT EEDDDHEDVD SETACEENIL RGEMFEILCC RSSVQQDTQQ
401: AQAEDLKRLV YDLIKEEETT QVNNNCSDMV IRRVLRKLEL WKEVESNTID MMIEEDFSRE QCRWKKNDEH TKELAVEVEL AIFCFLVEEL SEELLIC
101: LRIHTNKNAK PKPKPNRALG IFGSLFKKLT NRKRETIEGG AVAKVNKDSD DDDVVVVGSC EVGFTCSCNG RPSSAVWSES NEDKSLDLES SSSGNSFDDS
201: VVEEIEFLNK GKLINADDHG FFCQSPFRFS LQRSPDYSGR RTPVFSSPAA APCRRKTEDK EINGADGVNK FHSGEEEEDK EQCSPVSVLD PPFDDDNDDG
301: HDHDNGDDVF DLDCSYANVQ RTKQHLLDRL CRFEKLAELD PVELEKRMLD HEDREYETFT EEDDDHEDVD SETACEENIL RGEMFEILCC RSSVQQDTQQ
401: AQAEDLKRLV YDLIKEEETT QVNNNCSDMV IRRVLRKLEL WKEVESNTID MMIEEDFSRE QCRWKKNDEH TKELAVEVEL AIFCFLVEEL SEELLIC
001: MASQRHLKDL LEEDQEPFQL QSYISDRRCQ INAHVTHLQV KKRRPISQNA GLPSRFCRNA CFFSLRESPD PKKSPLFELK SPNRSQNAIF VNIPARTASI
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR
Arabidopsis Description
TRM28 [Source:UniProtKB/TrEMBL;Acc:A0A178UNJ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.