Factsheet for VIT_08s0007g03780.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0072g01030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36420.1	VIT_18s0072g01030.t01	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96149	Soybean	nucleus	52.08	53.28
KRH67860	Soybean	nucleus	51.7	53.2
PGSC0003DMT400006901	Potato	nucleus	45.85	49.69
Solyc10g083530.1.1	Tomato	nucleus	36.04	48.72
PGSC0003DMT400072630	Potato	nucleus	39.06	48.71
KRH20039	Soybean	nucleus	44.53	48.16
Solyc09g009220.2.1	Tomato	nucleus	43.58	47.93
KRH32670	Soybean	nucleus	43.77	46.68
Bra005776.1-P	Field mustard	nucleus	40.57	43.43
CDY11265	Canola	nucleus	40.38	43.32
AT5G03670.1	Thale cress	nucleus	41.7	42.83
CDX80882	Canola	nucleus	40.38	42.63
Bra009519.1-P	Field mustard	nucleus	39.62	41.5
CDX70294	Canola	nucleus	39.06	40.91
CDX84558	Canola	nucleus	29.06	38.6
Bra023069.1-P	Field mustard	nucleus	29.06	38.6
AT2G36420.1	Thale cress	nucleus	31.51	38.04
CDX79680	Canola	nucleus	28.68	37.81
Bra017237.1-P	Field mustard	nucleus	29.43	37.77
CDX75038	Canola	nucleus	30.57	36.82
CDY43718	Canola	mitochondrion, nucleus	20.0	36.68
Bra005267.1-P	Field mustard	nucleus	27.17	35.29
CDX84125	Canola	nucleus	26.42	34.91
CDY10365	Canola	nucleus	40.38	34.02

Protein Annotations

ArrayExpress:VIT_08s0007g03780	EMBL:FN595991	EnsemblPlants:VIT_08s0007g03780.t01	EnsemblPlantsGene:VIT_08s0007g03780	EntrezGene:100244201	EntrezGene:LOC100244201
InterPro:DUF4378	PANTHER:PTHR33623	PANTHER:PTHR33623:SF5	PFAM:PF14309	ProteinID:CCB55406	ProteinID:CCB55406.1
RefSeq:XP_002277252	RefSeq:XP_002277252.1	SEG:seg	unigene:Vvi.13432	unigene:Vvi.5173	UniParc:UPI0001983DF4
UniProt:F6HKI4	wikigene:100244201	wikigene:LOC100244201	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr8:+:17751999..17755207

Molecular Weight (calculated)

60542.5 Da

IEP (calculated)

4.679

GRAVY (calculated)

-0.808

Length

530 amino acids

Sequence
(BLAST)

001: MAHKNLHELL QEDQEPFLLK NYIADRRCQL KRPLPKTRIQ LKKRKPISET SSFSGNFCKN ACLFSFHDSP DVKKSPLWSP AKSPRKNSNA IFLHIPARTA
101: AMLLEAALRI QKQSSPKPKA QNKNVGFGIF GSIMKRLTQR NRNRKREIEG DGLRVSVKDI LRWDSSVGRK KFTEDFKNVS EEMVGVEEKS ASEMGFSCSC
201: NGRLSSVWSE SNEEKSLDME TSSSSQSEVS AEIIDFVSKE RQNGDFASCE KDFCTSPFRF VLQRSPSSGR HTPNFSSPAT SPGRHRSQDK ENNYEGESLI
301: EEEEEEKEQF SPVSILDPPF EDDDDGHEGD DDGDDDGSFD LECSYAIVQR AKQQLLHKLR RFEKLAELDP IELEKRMLEG LDDDNNDAAQ WDAESEDCVD
401: DDESIASDRE KKVDDFVREV LNKSGFHHFQ GIPQDMKRLV SDLIAQEERE QQCSRSREVV VERVCKRLES WTEVESNTID MMVELDFRRE LSGWSKNQEQ
501: VDEAAIEIEL AIFGLLVEEV SEELVCLKGI

Best Arabidopsis Sequence Match ( AT5G03670.1 )
(BLAST)

001: MASQRHLKDL LEEDQEPFQL QSYISDRRCQ INAHVTHLQV KKRRPISQNA GLPSRFCRNA CFFSLRESPD PKKSPLFELK SPNRSQNAIF VNIPARTASI
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR

Arabidopsis Description

TRM28 [Source:UniProtKB/TrEMBL;Acc:A0A178UNJ0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.