Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g065380.2.1 | |
| Solyc11g018610.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36420.1 | Solyc06g065380.2.1 | AT4G09570.1 | 19130088 |
| AT2G36420.1 | Solyc11g018610.1.1 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400006901 | Potato | nucleus | 83.82 | 82.62 |
| Solyc10g083530.1.1 | Tomato | nucleus | 41.49 | 51.02 |
| VIT_08s0007g03780.t01 | Wine grape | nucleus | 47.93 | 43.58 |
| KRH20039 | Soybean | nucleus | 43.15 | 42.45 |
| KRH32670 | Soybean | nucleus | 42.12 | 40.85 |
| KRG96149 | Soybean | nucleus | 42.95 | 39.96 |
| KRH67860 | Soybean | nucleus | 42.12 | 39.42 |
| Bra009519.1-P | Field mustard | nucleus | 36.93 | 35.18 |
| CDX70294 | Canola | nucleus | 36.72 | 34.98 |
| AT5G03670.1 | Thale cress | nucleus | 37.14 | 34.69 |
| CDX80882 | Canola | nucleus | 36.1 | 34.66 |
| CDY11265 | Canola | nucleus | 35.48 | 34.62 |
| Bra005776.1-P | Field mustard | nucleus | 35.48 | 34.55 |
| CDX84558 | Canola | nucleus | 28.42 | 34.34 |
| Bra023069.1-P | Field mustard | nucleus | 28.42 | 34.34 |
| CDX75038 | Canola | nucleus | 31.33 | 34.32 |
| Bra017237.1-P | Field mustard | nucleus | 29.25 | 34.14 |
| CDX79680 | Canola | nucleus | 28.22 | 33.83 |
| CDX84125 | Canola | nucleus | 28.01 | 33.67 |
| AT2G36420.1 | Thale cress | nucleus | 30.29 | 33.26 |
| CDY43718 | Canola | mitochondrion, nucleus | 19.5 | 32.53 |
| Bra005267.1-P | Field mustard | nucleus | 27.39 | 32.35 |
| CDY10365 | Canola | nucleus | 36.51 | 27.98 |
Protein Annotations
| EnsemblPlants:Solyc09g009220.2.1 | EnsemblPlantsGene:Solyc09g009220.2 | InterPro:DUF4378 | PANTHER:PTHR33623 | PANTHER:PTHR33623:SF5 | PFAM:PF14309 |
| SEG:seg | UniParc:UPI000276C4CE | UniProt:K4CQV1 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr9:-:2593727..2598249
Molecular Weight (calculated)
55894.1 Da
IEP (calculated)
4.677
GRAVY (calculated)
-0.873
Length
482 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQKHLHELL QEDQEPFKLK HYIADRRCQL NKNPSKYSLQ TVKKQKSISS PSNTSTLLCK HACFFTSIRK KSDGGSSERL SPINFPASTK SPVRKVFLHI
101: PASTSSLLLE SAMRIQKKQK NRPKLKKTQM GFGLFGSILK KFMNKKREIG MKRNEIVAEL TSGSCSCNHS RLSSAGWSES NEEKSMDFET SSSCRSENEE
201: IEDIELGICE NKYCSSPISP FRFSLQKCPS STGCRTPDFS SPVASPVRHK TEDKENYEDL SNIEQEEDEK EQCSPVSVLD PPFDDDGHER EYEYEDEDED
301: EEYDDCGIDC NYALVQRAQQ QLLSKLRRFE KLAELDPIEL EKLMLEEEEE EGNNDLEYDN DSLLSYRDRD FETFASEVTF PFDMKRLVSD LIYEEKTETN
401: NSNNREEEVV FGRVCKRLDS WQHVRSDTID MMIESDFKTE LDDWKKFHEQ REEAALEVEV SIFRLLVEEL AEEIVHFGGH HW
101: PASTSSLLLE SAMRIQKKQK NRPKLKKTQM GFGLFGSILK KFMNKKREIG MKRNEIVAEL TSGSCSCNHS RLSSAGWSES NEEKSMDFET SSSCRSENEE
201: IEDIELGICE NKYCSSPISP FRFSLQKCPS STGCRTPDFS SPVASPVRHK TEDKENYEDL SNIEQEEDEK EQCSPVSVLD PPFDDDGHER EYEYEDEDED
301: EEYDDCGIDC NYALVQRAQQ QLLSKLRRFE KLAELDPIEL EKLMLEEEEE EGNNDLEYDN DSLLSYRDRD FETFASEVTF PFDMKRLVSD LIYEEKTETN
401: NSNNREEEVV FGRVCKRLDS WQHVRSDTID MMIESDFKTE LDDWKKFHEQ REEAALEVEV SIFRLLVEEL AEEIVHFGGH HW
001: MASQRHLKDL LEEDQEPFQL QSYISDRRCQ INAHVTHLQV KKRRPISQNA GLPSRFCRNA CFFSLRESPD PKKSPLFELK SPNRSQNAIF VNIPARTASI
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR
Arabidopsis Description
TRM28 [Source:UniProtKB/TrEMBL;Acc:A0A178UNJ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.