Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009519.1-P | Field mustard | nucleus | 98.22 | 98.22 |
| CDX80882 | Canola | nucleus | 78.85 | 79.48 |
| AT5G03670.1 | Thale cress | nucleus | 80.04 | 78.49 |
| CDY11265 | Canola | nucleus | 75.49 | 77.33 |
| CDY10365 | Canola | nucleus | 91.7 | 73.77 |
| CDX75038 | Canola | nucleus | 34.98 | 40.23 |
| CDX84558 | Canola | nucleus | 31.62 | 40.1 |
| CDX79680 | Canola | nucleus | 31.62 | 39.8 |
| CDX84125 | Canola | nucleus | 31.03 | 39.15 |
| VIT_08s0007g03780.t01 | Wine grape | nucleus | 40.91 | 39.06 |
| KRH67860 | Soybean | nucleus | 39.33 | 38.64 |
| KRG96149 | Soybean | nucleus | 39.53 | 38.61 |
| PGSC0003DMT400072630 | Potato | nucleus | 32.02 | 38.12 |
| Solyc10g083530.1.1 | Tomato | nucleus | 29.45 | 38.01 |
| KRH20039 | Soybean | nucleus | 36.36 | 37.55 |
| CDY43718 | Canola | mitochondrion, nucleus | 21.34 | 37.37 |
| KRH32670 | Soybean | nucleus | 36.36 | 37.02 |
| PGSC0003DMT400006901 | Potato | nucleus | 35.77 | 37.01 |
| Solyc09g009220.2.1 | Tomato | nucleus | 34.98 | 36.72 |
Protein Annotations
| EnsemblPlants:CDX70294 | EnsemblPlantsGene:GSBRNA2T00136446001 | InterPro:DUF4378 | ncoils:Coil | PANTHER:PTHR33623 | PANTHER:PTHR33623:SF5 |
| PFAM:PF14309 | ProteinID:CDX70294 | ProteinID:CDX70294.1 | SEG:seg | UniParc:UPI0004EEC820 | MapMan:35.2 |
Description
BnaA10g26430D
Coordinates
chrLK031790:-:3982769..3986706
Molecular Weight (calculated)
57835.3 Da
IEP (calculated)
4.774
GRAVY (calculated)
-0.782
Length
506 amino acids
Sequence
(BLAST)
(BLAST)
001: MASQRHLKDL LEEDQEPFQL QSYISDRRCQ INPPATHLQV KKRRAISQNA GLPSRFCRNA CFFSLRESPD PNKSPLFEPK SLNQRQNAMF VNIPARTASM
101: LLEAAVRIQK HSSSEGSKTR TRNAGNAFGI FGSVLKKLTH RKKREISGGN DGDRVSSVKN MVSWESPLVR KIVTRKSKRE TQNPASEPQL SRRSSSSGVW
201: SESVINEERS YDCDFETSIS SRSGSDGLDE FASELMNGGD FSEDKRFCES PFHFVLQTMP STSGFRTPNF SSPAASPRHD CQEMKKESYE VEEEEEEDKE
301: QSSPVSVLDP PFDDDDEDIH MDDNNITSSF RSVQKAKHLL LQKLCRFEQL AGLDPLELEK RMSDQENEEE EEVKNRYQCE IITQRVVKTY FEDMREVPEG
401: IEALISDLVA EELHKDSFMQ GGEAQVAKSV CERLRSWRDV ESNTIDMMVE HDFRIESLGT WRSKNDSEVA EVVLDIEFEI FEDLVEELSQ DIGVIGYLYS
501: GSFRHK
101: LLEAAVRIQK HSSSEGSKTR TRNAGNAFGI FGSVLKKLTH RKKREISGGN DGDRVSSVKN MVSWESPLVR KIVTRKSKRE TQNPASEPQL SRRSSSSGVW
201: SESVINEERS YDCDFETSIS SRSGSDGLDE FASELMNGGD FSEDKRFCES PFHFVLQTMP STSGFRTPNF SSPAASPRHD CQEMKKESYE VEEEEEEDKE
301: QSSPVSVLDP PFDDDDEDIH MDDNNITSSF RSVQKAKHLL LQKLCRFEQL AGLDPLELEK RMSDQENEEE EEVKNRYQCE IITQRVVKTY FEDMREVPEG
401: IEALISDLVA EELHKDSFMQ GGEAQVAKSV CERLRSWRDV ESNTIDMMVE HDFRIESLGT WRSKNDSEVA EVVLDIEFEI FEDLVEELSQ DIGVIGYLYS
501: GSFRHK
001: MASQRHLKDL LEEDQEPFQL QSYISDRRCQ INAHVTHLQV KKRRPISQNA GLPSRFCRNA CFFSLRESPD PKKSPLFELK SPNRSQNAIF VNIPARTASI
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR
Arabidopsis Description
TRM28 [Source:UniProtKB/TrEMBL;Acc:A0A178UNJ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.