Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36420.1 | KRG91803 | AT4G09570.1 | 19130088 |
| AT2G36420.1 | KRH34983 | AT4G09570.1 | 19130088 |
| AT2G36420.1 | KRH34984 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH67860 | Soybean | nucleus | 82.63 | 83.11 |
| VIT_08s0007g03780.t01 | Wine grape | nucleus | 53.28 | 52.08 |
| KRH20039 | Soybean | nucleus | 48.07 | 50.82 |
| KRH32670 | Soybean | nucleus | 47.88 | 49.9 |
| PGSC0003DMT400006901 | Potato | nucleus | 40.93 | 43.35 |
| Solyc10g083530.1.1 | Tomato | nucleus | 32.63 | 43.11 |
| Bra005776.1-P | Field mustard | nucleus | 41.12 | 43.03 |
| Solyc09g009220.2.1 | Tomato | nucleus | 39.96 | 42.95 |
| CDY11265 | Canola | nucleus | 40.93 | 42.91 |
| CDX80882 | Canola | nucleus | 41.51 | 42.83 |
| PGSC0003DMT400072630 | Potato | nucleus | 34.75 | 42.35 |
| AT2G36420.1 | Thale cress | nucleus | 35.52 | 41.91 |
| CDX84558 | Canola | nucleus | 32.24 | 41.85 |
| Bra023069.1-P | Field mustard | nucleus | 32.24 | 41.85 |
| CDX79680 | Canola | nucleus | 32.05 | 41.29 |
| AT5G03670.1 | Thale cress | nucleus | 40.54 | 40.7 |
| Bra009519.1-P | Field mustard | nucleus | 39.58 | 40.51 |
| Bra017237.1-P | Field mustard | nucleus | 31.85 | 39.95 |
| CDX75038 | Canola | nucleus | 33.78 | 39.77 |
| CDX70294 | Canola | nucleus | 38.61 | 39.53 |
| Bra005267.1-P | Field mustard | nucleus | 30.12 | 38.24 |
| CDY43718 | Canola | mitochondrion, nucleus | 20.85 | 37.37 |
| CDX84125 | Canola | nucleus | 28.76 | 37.16 |
| CDY10365 | Canola | nucleus | 39.38 | 32.43 |
Protein Annotations
| EMBL:ACUP02012146 | EnsemblPlants:KRG96149 | EnsemblPlantsGene:GLYMA_19G192500 | EntrezGene:100814311 | PANTHER:PTHR33623 | PANTHER:PTHR33623:SF5 |
| ProteinID:KRG96149 | ProteinID:KRG96149.1 | SEG:seg | UniParc:UPI000233E172 | UniProt:I1NAK1 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr19:-:44990360..44993997
Molecular Weight (calculated)
59395.3 Da
IEP (calculated)
4.795
GRAVY (calculated)
-0.857
Length
518 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQRYLHQLL EEDQEPFLLN KYISDRRSQM KRPSPMTSLQ VKKRKSTNPN ANFPRNLCKS ACLFSLTDTP DLRKSPLFEF ASPVKSPYKS PNPIFLHIPS
101: RTAALLLEAA LRIQKHTSKP KTKAQSFGLF GSLYKRLTQR SHKRREIECG GGGVKVSVKD VLKWDSSVGR RKASKANGKC KETGNVNTNA SEVGFACSYN
201: IGRPSSSAVW SESNEDKSLD IETSSSGYSE KIHFVTNIHK HYSTCFCESP FRFVLQTSTP SSGHHTPELP SPSRHPTEEK ESNEGESLKK FESGEEEEED
301: KEQCSPVSVL DPPFEDDEEG HGNGDEEEEE EEEGGFDLEC SYAIVQRAKQ QLLYKLRRFE KLAELDPVEL EKRMQDQEED EDDTFMEEED GHDEKNQASC
401: KENDFRKLIF QALCQSSVHD RQQIPEDFKK LVSDLILEEE RALDSLEDKD MVISRICKRL ELWKEVESNT IDMMIEDDFA REDSEWKRNI EHIRNMAGEL
501: ELAIFGFLVE EFSEELVC
101: RTAALLLEAA LRIQKHTSKP KTKAQSFGLF GSLYKRLTQR SHKRREIECG GGGVKVSVKD VLKWDSSVGR RKASKANGKC KETGNVNTNA SEVGFACSYN
201: IGRPSSSAVW SESNEDKSLD IETSSSGYSE KIHFVTNIHK HYSTCFCESP FRFVLQTSTP SSGHHTPELP SPSRHPTEEK ESNEGESLKK FESGEEEEED
301: KEQCSPVSVL DPPFEDDEEG HGNGDEEEEE EEEGGFDLEC SYAIVQRAKQ QLLYKLRRFE KLAELDPVEL EKRMQDQEED EDDTFMEEED GHDEKNQASC
401: KENDFRKLIF QALCQSSVHD RQQIPEDFKK LVSDLILEEE RALDSLEDKD MVISRICKRL ELWKEVESNT IDMMIEDDFA REDSEWKRNI EHIRNMAGEL
501: ELAIFGFLVE EFSEELVC
001: MASQRHLKDL LEEDQEPFQL QSYISDRRCQ INAHVTHLQV KKRRPISQNA GLPSRFCRNA CFFSLRESPD PKKSPLFELK SPNRSQNAIF VNIPARTASI
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR
Arabidopsis Description
TRM28 [Source:UniProtKB/TrEMBL;Acc:A0A178UNJ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.