Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36420.1 | KRG91803 | AT4G09570.1 | 19130088 |
| AT2G36420.1 | KRH34983 | AT4G09570.1 | 19130088 |
| AT2G36420.1 | KRH34984 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH32670 | Soybean | nucleus | 74.49 | 73.44 |
| KRG96149 | Soybean | nucleus | 50.82 | 48.07 |
| KRH67860 | Soybean | nucleus | 48.57 | 46.21 |
| VIT_08s0007g03780.t01 | Wine grape | nucleus | 48.16 | 44.53 |
| Solyc09g009220.2.1 | Tomato | nucleus | 42.45 | 43.15 |
| PGSC0003DMT400006901 | Potato | nucleus | 42.65 | 42.74 |
| Solyc10g083530.1.1 | Tomato | nucleus | 31.43 | 39.29 |
| PGSC0003DMT400072630 | Potato | nucleus | 33.47 | 38.59 |
| Bra005776.1-P | Field mustard | nucleus | 37.14 | 36.77 |
| CDY43718 | Canola | mitochondrion, nucleus | 21.63 | 36.68 |
| CDY11265 | Canola | nucleus | 36.94 | 36.64 |
| Bra009519.1-P | Field mustard | nucleus | 37.76 | 36.56 |
| CDX80882 | Canola | nucleus | 37.35 | 36.45 |
| CDX70294 | Canola | nucleus | 37.55 | 36.36 |
| AT5G03670.1 | Thale cress | nucleus | 37.76 | 35.85 |
| CDX84558 | Canola | nucleus | 28.57 | 35.09 |
| Bra023069.1-P | Field mustard | nucleus | 28.57 | 35.09 |
| CDX79680 | Canola | nucleus | 28.16 | 34.33 |
| AT2G36420.1 | Thale cress | nucleus | 30.41 | 33.94 |
| Bra017237.1-P | Field mustard | nucleus | 28.16 | 33.41 |
| CDX75038 | Canola | nucleus | 30.0 | 33.41 |
| Bra005267.1-P | Field mustard | nucleus | 26.73 | 32.11 |
| CDX84125 | Canola | nucleus | 25.71 | 31.42 |
| CDY10365 | Canola | nucleus | 37.14 | 28.93 |
Protein Annotations
| EMBL:ACUP02008230 | EnsemblPlants:KRH20039 | EnsemblPlantsGene:GLYMA_13G152100 | EntrezGene:100782984 | ncoils:Coil | PANTHER:PTHR33623 |
| PANTHER:PTHR33623:SF5 | ProteinID:KRH20039 | ProteinID:KRH20039.1 | SEG:seg | UniParc:UPI00023CEBFC | UniProt:I1LZG4 |
| MapMan:35.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr13:-:26654582..26658661
Molecular Weight (calculated)
56114.3 Da
IEP (calculated)
4.673
GRAVY (calculated)
-0.845
Length
490 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEKHLRELL KEDQEPFLLK HYIWERRRQL KRPSPNSPLQ QQLKKKNSNF PLNKCFLTSL QNATKSPLLL SPKNSTSPLL RPSNAKTASL LLEAALRIHN
101: KNAKPKKPKP NSALGIFGSL FKKLTNRKRE TLEGVLVKVK DSDDDVVVVG SCEVGFSCSC NGRPSSAVWS ESNEDKSLDL ESSSSGHSFD DSVAEEIEFL
201: NKRKHVTDSA CFDDDDDHGF FCESPFRFSL QRSPGYSGRH TPDFSSPAAS PCRRKTEDKK INGADGVNKF QSGEEEEDKE QCSPVSVLDP PFDDDDDGHD
301: DDHEGDGFDL DCSYANVQRT KQHLLNRLRR FEKLAELDPV ELEKRMLDQD REYKTFTEED DDCEDGDSET ACKENALRGE LMFEILCHSS VEDTQQQTPE
401: DLKRLVYDLI KEEEREVNNS SDMVIRRVLR RLELWKEVES NTIDMMIEED FSREQCRWKK NAEHTSELAV ELELAIFCFL VEELSEELVC
101: KNAKPKKPKP NSALGIFGSL FKKLTNRKRE TLEGVLVKVK DSDDDVVVVG SCEVGFSCSC NGRPSSAVWS ESNEDKSLDL ESSSSGHSFD DSVAEEIEFL
201: NKRKHVTDSA CFDDDDDHGF FCESPFRFSL QRSPGYSGRH TPDFSSPAAS PCRRKTEDKK INGADGVNKF QSGEEEEDKE QCSPVSVLDP PFDDDDDGHD
301: DDHEGDGFDL DCSYANVQRT KQHLLNRLRR FEKLAELDPV ELEKRMLDQD REYKTFTEED DDCEDGDSET ACKENALRGE LMFEILCHSS VEDTQQQTPE
401: DLKRLVYDLI KEEEREVNNS SDMVIRRVLR RLELWKEVES NTIDMMIEED FSREQCRWKK NAEHTSELAV ELELAIFCFL VEELSEELVC
001: MASQRHLKDL LEEDQEPFQL QSYISDRRCQ INAHVTHLQV KKRRPISQNA GLPSRFCRNA CFFSLRESPD PKKSPLFELK SPNRSQNAIF VNIPARTASI
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR
101: LLEAAVRIQK QSSEVSKTRT RNAGNAFGIF GSVLKKLTNR KKREISGGKE AGRVSSSSVK DMLRWESPVV RKIVTRKSKR NEEENASSQT HKIASETHFS
201: RRSSSSGVWS ESVTNGERSW DVDFETSIST SSRSNGSDEF AMMMNGQDLS EDKRFCESPF HFVLQTMPSN GGFRTPNFSS PAASPRHDCH EMEKESYEVE
301: KLKKLEMEEE EEEKEQSSPV SVLDPPFQDD DEDIHMDDNN IPSSFRSVQK AKHLLLQKLC RFEQLAGLDP MELEKRMSDQ ETEEEEEEEE EEMKSLYHCE
401: IITQRVLKTY FEEMVEVPEG VEALISDLAA EELPSDIDGE AEAAIVAKRV CERLRSWRDV ESNTIDMMVE HDFRTERLGL WRSKNDADVS ETVLDIEFEI
501: FEDLVEELSE DIGGNR
Arabidopsis Description
TRM28 [Source:UniProtKB/TrEMBL;Acc:A0A178UNJ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.